RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 ITGB6P18564 788 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 KCNA5P22460 613 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 PTPN3P26045 913 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 AXLP30530 894 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 SLC15A1P46059 708 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 APLP1P51693 650 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 LAPTM4AQ15012 233 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 GTF2IRD2BQ6EKJ0 949 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 SULT1C3Q6IMI6 304 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 ERAP2Q6P179 960 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 SLC27A1Q6PCB7 646 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 SYCE2Q6PIF2 218 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 CD300LGQ6UXG3 332 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 HACD2Q6Y1H2 254 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 ZNF517Q6ZMY9 492 aaPredicted RBP9.46□□□□□ -0.9
CCDC40-212ENST00000574799 GTF2IRD2Q86UP8 949 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 GALNT13Q8IUC8 556 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 FAM20CQ8IXL6 584 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 MINDY1Q8N5J2 469 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 APPL2Q8NEU8 664 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 MUL1Q969V5 352 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 DACT3Q96B18 629 aaPredicted RBP9.46□□□□□ -0.9
CCDC40-212ENST00000574799 VMP1Q96GC9 406 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 AURKBQ96GD4 344 aaPredicted RBP9.46□□□□□ -0.9
CCDC40-212ENST00000574799 ZBTB18Q99592 522 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 CHCHD6Q9BRQ6 235 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 TRIM54Q9BYV2 358 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 ACTR8Q9H981 624 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 ADGRE2Q9UHX3 823 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 CRYL1Q9Y2S2 319 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 SMIM28A0A1B0GU29 152 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 UBA6A0AVT1 1052 aaPredicted RBP9.45□□□□□ -0.9
CCDC40-212ENST00000574799 RECQL4O94761 1208 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 ZNF682O95780 498 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 YES1P07947 543 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 FSHRP23945 695 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 TGFBR1P36897 503 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 INPP1P49441 399 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 OR4D2P58180 307 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 MGAT3Q09327 533 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 IRF5Q13568 498 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 OSTM1Q86WC4 334 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 IFNL1Q8IU54 200 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 METTL4Q8N3J2 472 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 NATD1Q8N6N6 113 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 DCBLD1Q8N8Z6 715 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 C3orf58Q8NDZ4 430 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 DUS3LQ96G46 650 aaKnown RBP9.45□□□□□ -0.9
CCDC40-212ENST00000574799 FAM49AQ9H0Q0 323 aaPredicted RBP9.45□□□□□ -0.9
CCDC40-212ENST00000574799 MUC13Q9H3R2 512 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 MAP10Q9P2G4 905 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 USP3Q9Y6I4 520 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 MYO16Q9Y6X6 1858 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 TTC34A8MYJ7 566 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 KATNA1O75449 491 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 SLC22A3O75751 556 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 MT-ND2P03891 347 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 SPNP16150 400 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 EIF2DP41214 584 aaKnown RBP9.45□□□□□ -0.9
CCDC40-212ENST00000574799 CLCA4Q14CN2 919 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 PCID2Q5JVF3 399 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 RBM20Q5T481 1227 aaKnown RBP9.45□□□□□ -0.9
CCDC40-212ENST00000574799 GPR158Q5T848 1215 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 STRADAQ7RTN6 431 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 OTOP3Q7RTS5 596 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 LDB1Q86U70 411 aaPredicted RBP9.45□□□□□ -0.9
CCDC40-212ENST00000574799 BPHLQ86WA6 291 aaPredicted RBP9.45□□□□□ -0.9
CCDC40-212ENST00000574799 FUNDC1Q8IVP5 155 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 PELI3Q8N2H9 469 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 OR5H6Q8NGV6 325 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 SPATA22Q8NHS9 363 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 SLC47A1Q96FL8 570 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 C3orf30Q96M34 536 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 KCNA7Q96RP8 456 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 OSBPL2Q9H1P3 480 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 TAS2R9Q9NYW1 312 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 OR6C70A6NIJ9 312 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 SLC1A2P43004 574 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 ACADSBP45954 432 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 PSMD8P48556 350 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 GP2P55259 537 aaKnown RBP9.45□□□□□ -0.9
CCDC40-212ENST00000574799 CTF1Q16619 201 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 BHLHA9Q7RTU4 235 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 MFSD4AQ8N468 514 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 PNPLA1Q8N8W4 532 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 KBTBD8Q8NFY9 601 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 LRRC20Q8TCA0 184 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 CENPIQ92674 756 aaPredicted RBP9.45□□□□□ -0.9
CCDC40-212ENST00000574799 KCNS3Q9BQ31 491 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 TSEN34Q9BSV6 310 aaKnown RBP9.45□□□□□ -0.9
CCDC40-212ENST00000574799 MMP27Q9H306 513 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 RERGLQ9H628 205 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 RUBCNLQ9H714 662 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 PLSCR3Q9NRY6 295 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 INTS7Q9NVH2 962 aaKnown RBP9.45□□□□□ -0.9
CCDC40-212ENST00000574799 MIOSQ9NXC5 875 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 KIAA1257Q9ULG3 409 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 DERAQ9Y315 318 aa9.45□□□□□ -0.9
CCDC40-212ENST00000574799 E5RI56 91 aa9.44□□□□□ -0.9
CCDC40-212ENST00000574799 KCNK2O95069 426 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms