RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 PLEKHS1Q5SXH7 462 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 TCEAL6Q6IPX3 200 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 UGT3A1Q6NUS8 523 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 SH2D5Q6ZV89 423 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 GPBAR1Q8TDU6 330 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 ANKRD49Q8WVL7 239 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 GLMNQ92990 594 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 TCEAL3Q969E4 200 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 ARL8AQ96BM9 186 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 SLC13A1Q9BZW2 595 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 KCNH6Q9H252 994 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 GPAMQ9HCL2 828 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 PCMTD2Q9NV79 361 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 TSR3Q9UJK0 312 aaKnown RBP16.27■□□□□ 0.2
VPS4A-202ENST00000562754 SLC6A14Q9UN76 642 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 RALGAPA1Q6GYQ0 2036 aa16.27■□□□□ 0.2
VPS4A-202ENST00000562754 A0A096LPK6 155 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 KLHL33A6NCF5 533 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 GOLGA8RI6L899 631 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 LIN7AO14910 233 aaPredicted RBP16.26■□□□□ 0.19
VPS4A-202ENST00000562754 SLCO2B1O94956 709 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 TOP3BO95985 862 aaKnown RBP16.26■□□□□ 0.19
VPS4A-202ENST00000562754 APOA4P06727 396 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 PDHA2P29803 388 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 SKIV2L2P42285 1042 aaKnown RBP16.26■□□□□ 0.19
VPS4A-202ENST00000562754 CLCNKAP51800 687 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 HSPA14Q0VDF9 509 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 DLG1Q12959 904 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 C1orf61Q13536 156 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 PRRT3Q5FWE3 981 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 RAPH1Q70E73 1250 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 CFAP206Q8IYR0 622 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 CENPLQ8N0S6 344 aaPredicted RBP16.26■□□□□ 0.19
VPS4A-202ENST00000562754 CNPY4Q8N129 248 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 ELF4Q99607 663 aaPredicted RBP16.26■□□□□ 0.19
VPS4A-202ENST00000562754 VPS11Q9H270 941 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 OSGEPL1Q9H4B0 414 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 OTOGLQ3ZCN5 2332 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 ARHGEF17Q96PE2 2063 aaPredicted RBP16.26■□□□□ 0.19
VPS4A-202ENST00000562754 WDFY4Q6ZS81 3184 aa16.26■□□□□ 0.19
VPS4A-202ENST00000562754 CABIN1Q9Y6J0 2220 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 GOLGA6L10A6NI86 522 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 H3BM21 787 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 KPNA5O15131 536 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 ATP8B1O43520 1251 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 KCNJ13O60928 360 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 SDC3O75056 442 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 PIAS2O75928 621 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 MPOP05164 745 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 RETP07949 1114 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 PYGBP11216 843 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 VCLP18206 1134 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 ATP5DP30049 168 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 ACTR1BP42025 376 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 RXRGP48443 463 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 ACTR1AP61163 376 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 HNRNPKP61978 463 aaKnown RBP eCLIP16.25■□□□□ 0.19
VPS4A-202ENST00000562754 IRX4P78413 519 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 ILF3Q12906 894 aaKnown RBP eCLIP16.25■□□□□ 0.19
VPS4A-202ENST00000562754 TTLL9Q3SXZ7 439 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 TAF1BQ53T94 588 aaPredicted RBP16.25■□□□□ 0.19
VPS4A-202ENST00000562754 TTMPQ5BVD1 217 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 METRNLQ641Q3 311 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 SLC30A9Q6PML9 568 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 PIWIL4Q7Z3Z4 852 aaKnown RBP16.25■□□□□ 0.19
VPS4A-202ENST00000562754 CLEC14AQ86T13 490 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 SRRM1Q8IYB3 904 aaKnown RBP16.25■□□□□ 0.19
VPS4A-202ENST00000562754 SLC22A15Q8IZD6 547 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 C4orf33Q8N1A6 199 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 PLD6Q8N2A8 252 aaKnown RBP16.25■□□□□ 0.19
VPS4A-202ENST00000562754 SPATA6LQ8N4H0 392 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 ZNF548Q8NEK5 533 aaPredicted RBP16.25■□□□□ 0.19
VPS4A-202ENST00000562754 OR2I1PQ8NGU4 316 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 ACMSDQ8TDX5 336 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 EEF1AKMT1Q8WVE0 214 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 KCTD4Q8WVF5 259 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 ASZ1Q8WWH4 475 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 TMEM159Q96B96 161 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 TLCD1Q96CP7 247 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 LINGO1Q96FE5 620 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 UBXN10Q96LJ8 280 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 RMDN2Q96LZ7 410 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 IRF2BPLQ9H1B7 796 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 OR52A5Q9H2C5 316 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 IL21RQ9HBE5 538 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 IGSF5Q9NSI5 407 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 IKZF3Q9UKT9 509 aa16.25■□□□□ 0.19
VPS4A-202ENST00000562754 A0A087X1B8 175 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 A0A1B0GTQ1 180 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 A6NCN8 305 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 ARHGAP33O14559 1287 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 EML2O95834 649 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 CCDC166P0CW27 439 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 CBSLP0DN79 551 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 CTSEP14091 401 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 CREB1P16220 341 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 DGKAP23743 735 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 CBSP35520 551 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 IL9RQ01113 521 aa16.24■□□□□ 0.19
VPS4A-202ENST00000562754 RPA4Q13156 261 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms