RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 MERTKQ12866 999 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 LAPTM4AQ15012 233 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 AP5B1Q2VPB7 878 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 ARMCX4Q5H9R4 360 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 ANKS6Q68DC2 871 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 IL27RAQ6UWB1 636 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 RBM12BQ8IXT5 1001 aaKnown RBP5.42□□□□□ -1.54
LIMA1-203ENST00000547825 TTC30BQ8N4P2 665 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 C7orf57Q8NEG2 295 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 CLEC4CQ8WTT0 213 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 PROX1Q92786 737 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 COPS5Q92905 334 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 HGH1Q9BTY7 390 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 YIPF2Q9BWQ6 316 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 USP29Q9HBJ7 922 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 POPDC2Q9HBU9 364 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 SMPD3Q9NY59 655 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-203ENST00000547825 CIDEBQ9UHD4 219 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 SPATA2Q9UM82 520 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 INVSQ9Y283 1065 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 AAR2Q9Y312 384 aaKnown RBP5.42□□□□□ -1.54
LIMA1-203ENST00000547825 MFHAS1Q9Y4C4 1052 aa5.42□□□□□ -1.54
LIMA1-203ENST00000547825 COPG1Q9Y678 874 aaKnown RBP5.42□□□□□ -1.54
LIMA1-203ENST00000547825 WDFY3Q8IZQ1 3526 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 SHISA3A0PJX4 238 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 PIPSLA2A3N6 862 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 H3BNX3 289 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 CCRL2O00421 344 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 SEPT4O43236 478 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 B3GAT3O94766 335 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 SOD2P04179 222 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 IL7RP16871 459 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 NMBRP28336 390 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 AQP1P29972 269 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 NR2C2P49116 596 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 CCT3P49368 545 aaKnown RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 CLCN2P51788 898 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 TAS2R39P59534 338 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 CDKL1Q00532 357 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 SLC18A2Q05940 514 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ZNF846Q147U1 533 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 PCBP2Q15366 365 aaKnown RBP eCLIP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 AARS2Q5JTZ9 985 aaKnown RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 DGKKQ5KSL6 1271 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 TTC23Q5W5X9 447 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 REP15Q6BDI9 236 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 THOC7Q6I9Y2 204 aaKnown RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 GLYATQ6IB77 296 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ESRP1Q6NXG1 681 aaKnown RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 KLHL17Q6TDP4 642 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 SHISA2Q6UWI4 295 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 PRR23CQ6ZRP0 262 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 PIGZQ86VD9 579 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ISOC1Q96CN7 298 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ZNF778Q96MU6 729 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 KLHL32Q96NJ5 620 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 CCDC106Q9BWC9 280 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ELOVL4Q9GZR5 314 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 RNF38Q9H0F5 515 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 TKTL2Q9H0I9 626 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 SDCBP2Q9H190 292 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 TMEM245Q9H330 911 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 IFT80Q9P2H3 777 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 OR12D3Q9UGF7 316 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 CYTH4Q9UIA0 394 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 SQORQ9Y6N5 450 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ASCC3Q8N3C0 2202 aaKnown RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 SCN1AP35498 2009 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ARID1AO14497 2285 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 HMX2A2RU54 273 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 EFCAB10A6NFE3 127 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 NRP1O14786 923 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 MTSS1O43312 755 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 SEC22BO75396 215 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 GSRP00390 522 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 THBDP07204 575 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 INSRRP14616 1297 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 IFNGR1P15260 489 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ZNF12P17014 697 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 PRKACGP22612 351 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 SLC5A2P31639 672 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 SOX6P35712 828 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 ACADSBP45954 432 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 CDK9P50750 372 aaKnown RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 NDST2P52849 883 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 IL2P60568 153 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 SQLEQ14534 574 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 GPNMBQ14956 572 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 PDCD4Q53EL6 469 aaKnown RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 GPR158Q5T848 1215 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 METTL21CQ5VZV1 264 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 TYW3Q6IPR3 259 aaKnown RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 MRNIPQ6NTE8 343 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 UGT2A3Q6UWM9 527 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 C15orf39Q6ZRI6 1047 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 VSIG10LQ86VR7 867 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 TTC39CQ8N584 583 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 CCDC185Q8N715 623 aa5.41□□□□□ -1.54
LIMA1-203ENST00000547825 C2CD4AQ8NCU7 369 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-203ENST00000547825 MAPK15Q8TD08 544 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms