RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 CCNL2Q96S94 520 aaPredicted RBP14.46□□□□□ -0.09
USP28-204ENST00000537642 CCM2Q9BSQ5 444 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 COG4Q9H9E3 785 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 HOMER3Q9NSC5 361 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 WDR70Q9NW82 654 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 SMARCAL1Q9NZC9 954 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 TCAF1Q9Y4C2 921 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 PRSS21Q9Y6M0 314 aa14.46□□□□□ -0.09
USP28-204ENST00000537642 K7ENP7 123 aa14.45□□□□□ -0.1
USP28-204ENST00000537642 KIF1CO43896 1103 aaKnown RBP14.45□□□□□ -0.1
USP28-204ENST00000537642 GOT2P00505 430 aaKnown RBP14.45□□□□□ -0.1
USP28-204ENST00000537642 SLC35G4P0C7Q5 338 aa14.45□□□□□ -0.1
USP28-204ENST00000537642 RAB15P59190 212 aa14.45□□□□□ -0.1
USP28-204ENST00000537642 PPP1CAP62136 330 aa14.45□□□□□ -0.1
USP28-204ENST00000537642 ACVR1Q04771 509 aa14.45□□□□□ -0.1
USP28-204ENST00000537642 LAMB3Q13751 1172 aa14.45□□□□□ -0.1
USP28-204ENST00000537642 ITIH4Q14624 930 aa14.45□□□□□ -0.1
USP28-204ENST00000537642 TTC27Q6P3X3 843 aa14.45□□□□□ -0.1
USP28-204ENST00000537642 INO80CQ6PI98 192 aaPredicted RBP14.45□□□□□ -0.1
USP28-204ENST00000537642 SLC35F6Q8N357 371 aa14.45□□□□□ -0.1
USP28-204ENST00000537642 SNRNP27Q8WVK2 155 aaKnown RBP14.45□□□□□ -0.1
USP28-204ENST00000537642 PBKQ96KB5 322 aa14.45□□□□□ -0.1
USP28-204ENST00000537642 RAB33BQ9H082 229 aa14.45□□□□□ -0.1
USP28-204ENST00000537642 APMAPQ9HDC9 416 aa14.45□□□□□ -0.1
USP28-204ENST00000537642 FBXO8Q9NRD0 319 aa14.45□□□□□ -0.1
USP28-204ENST00000537642 SIDT1Q9NXL6 827 aaKnown RBP14.45□□□□□ -0.1
USP28-204ENST00000537642 EPHA6Q9UF33 1036 aa14.45□□□□□ -0.1
USP28-204ENST00000537642 TEX51A0A1B0GUA7 166 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 TCRBV7S3A2A0A539 114 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 STMND1H3BQB6 276 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 TOX3O15405 576 aaPredicted RBP14.44□□□□□ -0.1
USP28-204ENST00000537642 ZSCAN12O43309 604 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 AP2A2O94973 939 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 PDHA2P29803 388 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 NSG1P42857 185 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 SEPHS1P49903 392 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 SESN2P58004 480 aaPredicted RBP14.44□□□□□ -0.1
USP28-204ENST00000537642 PLCL1Q15111 1095 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 TRIP13Q15645 432 aaPredicted RBP14.44□□□□□ -0.1
USP28-204ENST00000537642 DCAF12Q5T6F0 453 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 IRGCQ6NXR0 463 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 AFTPHQ6ULP2 937 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 PACS1Q6VY07 963 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 CCDC81Q6ZN84 652 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 FAM92BQ6ZTR7 304 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 ZNF534Q76KX8 674 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 NLRP9Q7RTR0 991 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 PRSS42Q7Z5A4 293 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 VASH2Q86V25 355 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 PPHLN1Q8NEY8 458 aaKnown RBP14.44□□□□□ -0.1
USP28-204ENST00000537642 ZFPM2Q8WW38 1151 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 ZDHHC12Q96GR4 267 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 UBL7Q96S82 380 aaPredicted RBP14.44□□□□□ -0.1
USP28-204ENST00000537642 CTRCQ99895 268 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 ASPSCR1Q9BZE9 553 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 OR52A5Q9H2C5 316 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 ZNF768Q9H5H4 540 aaKnown RBP14.44□□□□□ -0.1
USP28-204ENST00000537642 KIR3DX1Q9H7L2 352 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 VPS37BQ9H9H4 285 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 CHRAC1Q9NRG0 131 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 TRMT1Q9NXH9 659 aaKnown RBP14.44□□□□□ -0.1
USP28-204ENST00000537642 SLC24A2Q9UI40 661 aa14.44□□□□□ -0.1
USP28-204ENST00000537642 TTC7AQ9ULT0 858 aaPredicted RBP14.44□□□□□ -0.1
USP28-204ENST00000537642 OR1I1O60431 355 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 RASSF9O75901 435 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 GSTM1P09488 218 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 TPSB2P20231 275 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 PREPP48147 710 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 CRADDP78560 199 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 GSTM4Q03013 218 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 GSE1Q14687 1217 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 TPSAB1Q15661 275 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 PCID2Q5JVF3 399 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 MANEAQ5SRI9 462 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 CACHD1Q5VU97 1274 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 CEACAM20Q6UY09 585 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 OR6P1Q8NGX9 317 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 OR4L1Q8NH43 312 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 COG1Q8WTW3 980 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 KLHL6Q8WZ60 621 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 PEX13Q92968 403 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.43□□□□□ -0.12e-7■■■■■ 62.8
USP28-204ENST00000537642 MAGOHBQ96A72 148 aaKnown RBP14.43□□□□□ -0.1
USP28-204ENST00000537642 SGSM3Q96HU1 749 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 TEFMQ96QE5 360 aaKnown RBP14.43□□□□□ -0.1
USP28-204ENST00000537642 AP1M1Q9BXS5 423 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 SPRY4Q9C004 299 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 SEMA5BQ9P283 1151 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 PCDHB11Q9Y5F2 797 aa14.43□□□□□ -0.1
USP28-204ENST00000537642 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.42□□□□□ -0.1
USP28-204ENST00000537642 OR5K3A6NET4 321 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 WT1P19544 449 aaPredicted RBP14.42□□□□□ -0.1
USP28-204ENST00000537642 NPY2RP49146 381 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 VPS41P49754 854 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 SH3BP2P78314 561 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 PRAMEP78395 509 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 CDK16Q00536 496 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 RPA4Q13156 261 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 SEMA3AQ14563 771 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 KCNJ11Q14654 390 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms