RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 DNAJC16Q9Y2G8 782 aa14.18□□□□□ -0.14
CPSF1-206ENST00000531480 WDR37Q9Y2I8 494 aa14.18□□□□□ -0.14
CPSF1-206ENST00000531480 MED16Q9Y2X0 877 aa14.18□□□□□ -0.14
CPSF1-206ENST00000531480 COMMD10Q9Y6G5 202 aa14.18□□□□□ -0.14
CPSF1-206ENST00000531480 PTPRBP23467 1997 aa14.18□□□□□ -0.14
CPSF1-206ENST00000531480 SPAARA0A1B0GVQ0 90 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 TCRBV9S1A1TA0A576 114 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 SPAG6O75602 509 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 RHOXF2BP0C7M4 288 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 MYF5P13349 255 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 CD9P21926 228 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 AOAHP28039 575 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 SSTR1P30872 391 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 CCR7P32248 378 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 CD151P48509 253 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 MAZP56270 477 aaKnown RBP14.17□□□□□ -0.14
CPSF1-206ENST00000531480 SIM1P81133 766 aaPredicted RBP14.17□□□□□ -0.14
CPSF1-206ENST00000531480 DAB2P98082 770 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 MGAT5Q09328 741 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 CLCA4Q14CN2 919 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 SMAD1Q15797 465 aaKnown RBP14.17□□□□□ -0.14
CPSF1-206ENST00000531480 ERCC6LQ2NKX8 1250 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 WDR93Q6P2C0 686 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 ZNF549Q6P9A3 640 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 SLC26A11Q86WA9 606 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 LKAAEAR1Q8TD35 194 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 IFT81Q8WYA0 676 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 PKNOX2Q96KN3 472 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 C9orf72Q96LT7 481 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 PANX3Q96QZ0 392 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 RHOXF2Q9BQY4 288 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 TSSK1BQ9BXA7 367 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 OSGEPL1Q9H4B0 414 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 ZNF624Q9P2J8 865 aaPredicted RBP14.17□□□□□ -0.14
CPSF1-206ENST00000531480 KLHL42Q9P2K6 505 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 RNF215Q9Y6U7 377 aa14.17□□□□□ -0.14
CPSF1-206ENST00000531480 FAM159BA6NKW6 160 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 IQCF5A8MTL0 148 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 PPM1DO15297 605 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 RFPL3O75679 317 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 HAUS5O94927 633 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 SLCO2B1O94956 709 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 AHSGP02765 367 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 PKMP14618 531 aaKnown RBP14.16□□□□□ -0.14
CPSF1-206ENST00000531480 RPL10P27635 214 aaKnown RBP14.16□□□□□ -0.14
CPSF1-206ENST00000531480 PBLDP30039 288 aaPredicted RBP14.16□□□□□ -0.14
CPSF1-206ENST00000531480 SLC19A1P41440 591 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 GPR3P46089 330 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 EIF3BP55884 814 aaKnown RBP14.16□□□□□ -0.14
CPSF1-206ENST00000531480 MPP1Q00013 466 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 SQSTM1Q13501 440 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 PERM1Q5SV97 790 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 CNSTQ6PJW8 725 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 C3orf62Q6ZUJ4 267 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 SLC9B2Q86UD5 537 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 PALM2Q8IXS6 379 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 CFAP206Q8IYR0 622 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 CACTIN-AS1Q8N1I8 211 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 OTUD6BQ8N6M0 293 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 IFI44Q8TCB0 444 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 MAPK15Q8TD08 544 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 ADAMTS14Q8WXS8 1223 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 KCNJ9Q92806 393 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 ANKZF1Q9H8Y5 726 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 FBXO6Q9NRD1 293 aaPredicted RBP14.16□□□□□ -0.14
CPSF1-206ENST00000531480 SMYD2Q9NRG4 433 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 POT1Q9NUX5 634 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 CPNE7Q9UBL6 633 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 RABGEF1Q9UJ41 708 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 CORO1CQ9ULV4 474 aaPredicted RBP14.16□□□□□ -0.14
CPSF1-206ENST00000531480 APOBEC2Q9Y235 224 aaKnown RBP14.16□□□□□ -0.14
CPSF1-206ENST00000531480 CRYL1Q9Y2S2 319 aa14.16□□□□□ -0.14
CPSF1-206ENST00000531480 UBA6A0AVT1 1052 aaPredicted RBP14.15□□□□□ -0.14
CPSF1-206ENST00000531480 CCDC151A5D8V7 595 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 PDZK1P1A8MUH7 402 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 NTN3O00634 580 aaPredicted RBP14.15□□□□□ -0.14
CPSF1-206ENST00000531480 KPNA5O15131 536 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 SNX2O60749 519 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 ACADLP28330 430 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 PDHA2P29803 388 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 ATP5DP30049 168 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 FMO4P31512 558 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 CLCN7P51798 805 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 TIAL1Q01085 375 aaKnown RBP eCLIP14.15□□□□□ -0.14
CPSF1-206ENST00000531480 E2F1Q01094 437 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 ILF2Q12905 390 aaKnown RBP14.15□□□□□ -0.14
CPSF1-206ENST00000531480 RPE65Q16518 533 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 PTRHD1Q6GMV3 140 aaKnown RBP14.15□□□□□ -0.14
CPSF1-206ENST00000531480 EFL1Q7Z2Z2 1120 aaKnown RBP14.15□□□□□ -0.14
CPSF1-206ENST00000531480 RAB44Q7Z6P3 723 aaPredicted RBP14.15□□□□□ -0.14
CPSF1-206ENST00000531480 CCDC25Q86WR0 208 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 RBM12BQ8IXT5 1001 aaKnown RBP14.15□□□□□ -0.14
CPSF1-206ENST00000531480 SLC22A15Q8IZD6 547 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 ZFPM2Q8WW38 1151 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 ASZ1Q8WWH4 475 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 ELMO1Q92556 727 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 CCDC74AQ96AQ1 378 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 RMDN2Q96LZ7 410 aa14.15□□□□□ -0.14
CPSF1-206ENST00000531480 INSM2Q96T92 566 aaPredicted RBP14.15□□□□□ -0.14
CPSF1-206ENST00000531480 AARSD1Q9BTE6 412 aaKnown RBP14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms