RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ANKRD66B4E2M5 251 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 GJB5O95377 273 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SNAP29O95721 258 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 LDLRP01130 860 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 NPPAP01160 153 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SELPLGQ14242 412 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 AASDHQ4L235 1098 aaPredicted RBP15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ZRANB3Q5FWF4 1079 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 RALGPS2Q86X27 583 aaPredicted RBP15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PROSER1Q86XN7 944 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 MAGEE2Q8TD90 523 aaPredicted RBP15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 KCNJ9Q92806 393 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 C12orf43Q96C57 262 aaKnown RBP15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SEPHS2Q99611 448 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CHID1Q9BWS9 393 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 NTN4Q9HB63 628 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CDC14AQ9UNH5 594 aa15.86■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 COL6A3P12111 3177 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ZNF701M0R085 212 aaPredicted RBP15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 GPR39O43194 453 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CD160O95971 181 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 KLKB1P03952 638 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CLCN7P51798 805 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ESRRGP62508 458 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TRAF2Q12933 501 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PRKG2Q13237 762 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 AAK1Q2M2I8 961 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ATP6AP1LQ52LC2 224 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 RTP2Q5QGT7 225 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ABRAXAS1Q6UWZ7 409 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 NCCRP1Q6ZVX7 275 aaPredicted RBP15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 LYSMD3Q7Z3D4 306 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 DENND1CQ8IV53 801 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 EFHBQ8N7U6 833 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TTLL2Q9BWV7 592 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 LRRC3Q9BY71 257 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 P2RY12Q9H244 342 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 RETREG1Q9H6L5 497 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PFDN4Q9NQP4 134 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 RHBDL2Q9NX52 303 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 DNMT3LQ9UJW3 386 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 FNDC3AQ9Y2H6 1198 aaKnown RBP15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 NEUROG3Q9Y4Z2 214 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PCDHB3Q9Y5E6 796 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 V9GYQ6 96 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PTPRSQ13332 1948 aa15.85■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ILVBLA1L0T0 632 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 GRXCR2A6NFK2 248 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 UPK1AO00322 258 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 OR7A17O14581 309 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 KIAA0355O15063 1070 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ANKRD28O15084 1053 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SNAP91O60641 907 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ATP5C1P36542 298 aaKnown RBP15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PMS2P3Q13401 168 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 GLYATQ6IB77 296 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ZNF554Q86TJ5 538 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 H7C0S8 307 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CBX4O00257 560 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ARNTLO00327 626 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 GIPC1O14908 333 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 STX7O15400 261 aaKnown RBP15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CLDN11O75508 207 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 RSL1D1O76021 490 aaKnown RBP15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CAPN1P07384 714 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 RHOCP08134 193 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 G6PDP11413 515 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 STT3AP46977 705 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SLC11A2P49281 568 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ADARP55265 1226 aaKnown RBP15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PCBP2Q15366 365 aaKnown RBP eCLIP15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 OSCP1Q8WVF1 389 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 VPS50Q96JG6 964 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SARS2Q9NP81 518 aaKnown RBP15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 NUDT4Q9NZJ9 180 aa15.84■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 LTBP2Q14767 1821 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 LSM1O15116 133 aaKnown RBP15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PTGER3P43115 390 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 SLC11A1P49279 550 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 GALK1P51570 392 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 ARF5P84085 180 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PLA2G4EQ3MJ16 856 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 HABP4Q5JVS0 413 aaKnown RBP15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CYP20A1Q6UW02 462 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 IL27RAQ6UWB1 636 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TAS1R1Q7RTX1 841 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 GOLGA7Q7Z5G4 137 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 DTWD1Q8N5C7 304 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 METTL6Q8TCB7 284 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 EID2BQ96D98 161 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 NSMCE2Q96MF7 247 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 PPM1MQ96MI6 270 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 RNF145Q96MT1 663 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 HBEGFQ99075 208 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CXorf21Q9HAI6 301 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TMEM161AQ9NX61 479 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 CDH7Q9ULB5 785 aa15.83■□□□□ 0.13
MSH5-SAPCD1-208ENST00000498473 TMX2-CTNND1H3BSU7 103 aa15.83■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PRSS23O95084 383 aa15.83■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ATE1O95260 518 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms