RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	KIAA0754	O94854	1291 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	EPO	P01588	193 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	ANKRD34C	P0C6C1	535 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	SPTB	P11277	2137 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	DLST	P36957	453 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	STAT5A	P42229	794 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	HAL	P42357	657 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	NAP1L1	P55209	391 aa	Known RBP	10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	PPP1CA	P62136	330 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	MPP3	Q13368	585 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	MRPL49	Q13405	166 aa	Known RBP	10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	NFE2L1	Q14494	772 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	SPA17	Q15506	151 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	RPE65	Q16518	533 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	CRTC2	Q53ET0	693 aa	Predicted RBP	10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	FNBP1L	Q5T0N5	605 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	GPRC6A	Q5T6X5	926 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	AGAP9	Q5VTM2	703 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	WASH2P	Q6VEQ5	465 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	MAMDC2	Q7Z304	686 aa	Predicted RBP	10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	DAAM2	Q86T65	1068 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	PACS2	Q86VP3	889 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	GALNT6	Q8NCL4	622 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	GPR150	Q8NGU9	434 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	ZNF398	Q8TD17	642 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	BRSK1	Q8TDC3	778 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	RBM41	Q96IZ5	413 aa	Known RBP	10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	QKI	Q96PU8	341 aa	Known RBP eCLIP	10.35	□□□□□ -0.75	3e-41	■■■■■ 75.6
HMGN1-215	ENST00000485550	VAT1	Q99536	393 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	FSD1L	Q9BXM9	530 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	TRIT1	Q9H3H1	467 aa	Known RBP	10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	WASH6P	Q9NQA3	447 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	NPDC1	Q9NQX5	325 aa	Predicted RBP	10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	HACD3	Q9P035	362 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	POLH	Q9Y253	713 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	SVIL	O95425	2214 aa		10.35	□□□□□ -0.75
HMGN1-215	ENST00000485550	CROCC	Q5TZA2	2017 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	CCDC88C	Q9P219	2028 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	CDC14C	A4D256	554 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	RCCD1	A6NED2	376 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	HACD1	B0YJ81	288 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	SMAP	O00193	183 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	SPAG6	O75602	509 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	NDUFA10	O95299	355 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	HLA-DPA1	P20036	260 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	MSH3	P20585	1137 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	AKT1	P31749	480 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	CAPZB	P47756	277 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	HADHB	P55084	474 aa	Known RBP	10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	RIPPLY3	P57055	190 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	OTUD4	Q01804	1114 aa	Known RBP	10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	KCNAB1	Q14722	419 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	PLCL1	Q15111	1095 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	NADK2	Q4G0N4	442 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	LDLRAP1	Q5SW96	308 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	ZDHHC20	Q5W0Z9	365 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	AADACL2	Q6P093	401 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	C6orf15	Q6UXA7	325 aa	Predicted RBP	10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	CERS6	Q6ZMG9	384 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	BBS12	Q6ZW61	710 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	TICAM1	Q8IUC6	712 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	RBM12B	Q8IXT5	1001 aa	Known RBP	10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	ESX1	Q8N693	406 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	OR4K2	Q8NGD2	314 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	PRR7	Q8TB68	274 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	ZDHHC12	Q96GR4	267 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	INSM2	Q96T92	566 aa	Predicted RBP	10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	GORASP1	Q9BQQ3	440 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	ZCCHC2	Q9C0B9	1178 aa	Known RBP	10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	ZNF768	Q9H5H4	540 aa	Known RBP	10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	FAM96A	Q9H5X1	160 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	IMP3	Q9NV31	184 aa	Known RBP	10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	FKBPL	Q9UIM3	349 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	LNPEP	Q9UIQ6	1025 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	CROT	Q9UKG9	612 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	TRHDE	Q9UKU6	1024 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	DUSP10	Q9Y6W6	482 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	ITPR3	Q14573	2671 aa		10.34	□□□□□ -0.75
HMGN1-215	ENST00000485550	IGHV5-51	A0A0C4DH38	117 aa		10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	SOWAHD	A6NJG2	315 aa		10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	TCP11X1	B4DZS4	312 aa		10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	C3orf80	F5H4A9	247 aa		10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	APOC4-APOC2	K7ER74	178 aa		10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	TOX3	O15405	576 aa	Predicted RBP	10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	DDX3Y	O15523	660 aa	Known RBP	10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	KCNJ13	O60928	360 aa		10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	LCA5L	O95447	670 aa		10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	PRAMEF1	O95521	474 aa		10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	DDAH2	O95865	285 aa		10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	APOC2	P02655	101 aa		10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	POLB	P06746	335 aa		10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	FOLR1	P15328	257 aa		10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	LPO	P22079	712 aa	Predicted RBP	10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	CTNNA2	P26232	953 aa		10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	ELAVL4	P26378	380 aa	Known RBP	10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	PSMB4	P28070	264 aa		10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	CYLC1	P35663	651 aa	Predicted RBP	10.33	□□□□□ -0.76
HMGN1-215	ENST00000485550	GEM	P55040	296 aa		10.33	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms