RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 MSH3P20585 1137 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CD97P48960 835 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ZNF140P52738 457 aaPredicted RBP11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 HSD11B2P80365 405 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 OTUD4Q01804 1114 aaKnown RBP11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ACY1Q03154 408 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 TUBB3Q13509 450 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 DNASE1L3Q13609 305 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ERV3-1Q14264 604 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 IGFBP7Q16270 282 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 LACTB2Q53H82 288 aaPredicted RBP11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ANKRD20A2Q5SQ80 823 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ANKRD20A1Q5TYW2 823 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ANKRD20A3Q5VUR7 823 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CYB5D1Q6P9G0 228 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 LILRA3Q8N6C8 439 aaPredicted RBP11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SIDT2Q8NBJ9 832 aaKnown RBP11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SLC38A9Q8NBW4 561 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 RNF214Q8ND24 703 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 NAT14Q8WUY8 206 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ZNF501Q96CX3 271 aaPredicted RBP11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ELMO2Q96JJ3 720 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ANP32EQ9BTT0 268 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 FICDQ9BVA6 458 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 FSD1LQ9BXM9 530 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 GPR87Q9BY21 358 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 WWP1Q9H0M0 922 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 FGF21Q9NSA1 209 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 HRASLS2Q9NWW9 162 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 FKBPLQ9UIM3 349 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 LNPEPQ9UIQ6 1025 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 RARRES3Q9UL19 164 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 BTRCQ9Y297 605 aa11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CFAP20Q9Y6A4 193 aaKnown RBP11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SPTAN1Q13813 2472 aaKnown RBP11.95□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SHANK1Q9Y566 2161 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 TRBV5-4A0A0C4DH59 114 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 C17orf113A0A1B0GUU1 675 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 C2orf81A6NN90 581 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 BTNL10A8MVZ5 291 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 H7C0C1 242 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PJA2O43164 708 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 LDB2O43679 373 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ABCB7O75027 752 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SNRNP200O75643 2136 aaKnown RBP11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ZBTB11O95625 1053 aaPredicted RBP11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 MSL3P1P0C860 447 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PYGMP11217 842 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PSMA3P25788 255 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CTNNA2P26232 953 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PSMB4P28070 264 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 TNNT3P45378 269 aaPredicted RBP11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ATP5OP48047 213 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PRLHRP49683 370 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 KPNA2P52292 529 aaKnown RBP11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PMS2P54278 862 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 TUBB4BP68371 445 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SEMA5AQ13591 1074 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 TUBB2AQ13885 445 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SEPT6Q14141 434 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 KCTD11Q693B1 232 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ITPRIPL1Q6GPH6 555 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 DAAM2Q86T65 1068 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CCDC50Q8IVM0 306 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 OR13C4Q8NGS5 318 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 OR8K5Q8NH50 307 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 CALR3Q96L12 384 aaKnown RBP11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 RMDN2Q96LZ7 410 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 C12orf66Q96MD2 445 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PPM1MQ96MI6 270 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 LRFN5Q96NI6 719 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 RUFY1Q96T51 708 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 TUBB2BQ9BVA1 445 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 OSBPL8Q9BZF1 889 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 OR52A5Q9H2C5 316 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ASB8Q9H765 288 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 MLXIPLQ9NP71 852 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 LATS2Q9NRM7 1088 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 TLK1Q9UKI8 766 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 TP53TG5Q9Y2B4 290 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 AAR2Q9Y312 384 aaKnown RBP11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 DUSP10Q9Y6W6 482 aa11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 SPTBN1Q01082 2364 aaKnown RBP11.94□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PIPSLA2A3N6 862 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 H7C0S8 307 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 KATNA1O75449 491 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PDGFAP04085 211 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 NTRK1P04629 796 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 RBP3P10745 1247 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 NR1D1P20393 614 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PTPN4P29074 926 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 PDE1BQ01064 536 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 KLRB1Q12918 225 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 UGT8Q16880 541 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 ZNF789Q5FWF6 425 aa11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 DNTTIP2Q5QJE6 756 aaKnown RBP11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 DUS1LQ6P1R4 473 aaKnown RBP11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 FAM199XQ6PEV8 388 aaPredicted RBP11.93□□□□□ -0.5
MSH5-SAPCD1-205ENST00000476085 DET1Q7L5Y6 550 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms