RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 HK3P52790 923 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 ZNF177Q13360 481 aaPredicted RBP12.47□□□□□ -0.41
LIG1-201ENST00000263274 DAG1Q14118 895 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 ARHGEF7Q14155 803 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 SIM2Q14190 667 aaPredicted RBP12.47□□□□□ -0.41
LIG1-201ENST00000263274 CPSF6Q16630 551 aaKnown RBP eCLIP12.47□□□□□ -0.41
LIG1-201ENST00000263274 GTDC1Q4AE62 458 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 Q6ZSR9 355 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 THAP5Q7Z6K1 395 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 BORCS5Q969J3 196 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 PPP1R14BQ96C90 147 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 BIRC8Q96P09 236 aa12.47□□□□□ -0.41
LIG1-201ENST00000263274 HTR3EA5X5Y0 456 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 FAM155AB1AL88 458 aaPredicted RBP12.46□□□□□ -0.41
LIG1-201ENST00000263274 INSIG1O15503 277 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 PRKD3O94806 890 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 HOXB8P17481 243 aaPredicted RBP12.46□□□□□ -0.41
LIG1-201ENST00000263274 ZNF157P51786 506 aaPredicted RBP12.46□□□□□ -0.41
LIG1-201ENST00000263274 RAD23AP54725 363 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 EEFSECP57772 596 aaKnown RBP12.46□□□□□ -0.41
LIG1-201ENST00000263274 ABRAXAS2Q15018 415 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 PIWIL3Q7Z3Z3 882 aaKnown RBP12.46□□□□□ -0.41
LIG1-201ENST00000263274 DUS3LQ96G46 650 aaKnown RBP12.46□□□□□ -0.41
LIG1-201ENST00000263274 PCDH12Q9NPG4 1184 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 FARSBQ9NSD9 589 aaKnown RBP12.46□□□□□ -0.41
LIG1-201ENST00000263274 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.46□□□□□ -0.41
LIG1-201ENST00000263274 HCSTQ9UBK5 93 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 MIA3Q5JRA6 1907 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 NDUFB5O43674 189 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 EEDO75530 441 aaKnown RBP12.46□□□□□ -0.41
LIG1-201ENST00000263274 ALPIP09923 528 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 AGXTP21549 392 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 AKT1P31749 480 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 YBEYP58557 167 aaPredicted RBP12.46□□□□□ -0.41
LIG1-201ENST00000263274 TRIM32Q13049 653 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 PGS1Q32NB8 556 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 EGFLAMQ63HQ2 1017 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 ELMSAN1Q6PJG2 1045 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 SPRED1Q7Z699 444 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 PROSER1Q86XN7 944 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 SNX29P2Q8IUI4 249 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 KLHDC8BQ8IXV7 354 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 KRTCAP2Q8N6L1 136 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 STON2Q8WXE9 905 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 CIPCQ9C0C6 399 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 LHPPQ9H008 270 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 FAIMQ9NVQ4 179 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 TRNAU1APQ9NX07 287 aaKnown RBP12.46□□□□□ -0.41
LIG1-201ENST00000263274 TUBA8Q9NY65 449 aaPredicted RBP12.46□□□□□ -0.41
LIG1-201ENST00000263274 VAPAQ9P0L0 249 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 BAG5Q9UL15 447 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 PCDHB8Q9UN66 801 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 ORC6Q9Y5N6 252 aa12.46□□□□□ -0.41
LIG1-201ENST00000263274 CFAP99D6REC4 459 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 FTH1P02794 183 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 RPS17P08708 135 aaKnown RBP12.46□□□□□ -0.42
LIG1-201ENST00000263274 UMPSP11172 480 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 RPL17P18621 184 aaKnown RBP12.46□□□□□ -0.42
LIG1-201ENST00000263274 TTKP33981 857 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 TTPAP49638 278 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 GSTM4Q03013 218 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 OCA2Q04671 838 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 NFATC3Q12968 1075 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 EIF4EBP2Q13542 120 aaPredicted RBP12.46□□□□□ -0.42
LIG1-201ENST00000263274 MORN1Q5T089 497 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 ATXN7L2Q5T6C5 722 aaPredicted RBP12.46□□□□□ -0.42
LIG1-201ENST00000263274 RNF219Q5W0B1 726 aaPredicted RBP12.46□□□□□ -0.42
LIG1-201ENST00000263274 CARNMT1Q8N4J0 409 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 SLC15A4Q8N697 577 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 SNX19Q92543 992 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 PKMYT1Q99640 499 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 ACTR8Q9H981 624 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 MAGEL2Q9UJ55 1249 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 EIF3LQ9Y262 564 aaKnown RBP12.46□□□□□ -0.42
LIG1-201ENST00000263274 COQ6Q9Y2Z9 468 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 TRIM17Q9Y577 477 aa12.46□□□□□ -0.42
LIG1-201ENST00000263274 MYLKQ15746 1914 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 C16orf96A6NNT2 1141 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 K7EPI3 171 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 XPNPEP2O43895 674 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 DIRAS1O95057 198 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 EIF2B2P49770 351 aaKnown RBP12.45□□□□□ -0.42
LIG1-201ENST00000263274 GTF2H2Q13888 395 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 MAPK11Q15759 364 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 TRIM16LQ309B1 348 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 SPANXN4Q5MJ08 99 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 NADSYN1Q6IA69 706 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 SULT1C3Q6IMI6 304 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 GTF2H2CQ6P1K8 395 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 CRTC3Q6UUV7 619 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 TSSK3Q96PN8 268 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 CLPBQ9H078 707 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 NLE1Q9NVX2 485 aaPredicted RBP12.45□□□□□ -0.42
LIG1-201ENST00000263274 PCDHGA11Q9Y5H2 935 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 DUSP11O75319 330 aaKnown RBP12.45□□□□□ -0.42
LIG1-201ENST00000263274 ENO2P09104 434 aaPredicted RBP12.45□□□□□ -0.42
LIG1-201ENST00000263274 MYCLP1P12525 358 aaPredicted RBP12.45□□□□□ -0.42
LIG1-201ENST00000263274 CDH1P12830 882 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 SLC11A2P49281 568 aa12.45□□□□□ -0.42
LIG1-201ENST00000263274 GATMP50440 423 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms