RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 KCNK10P57789 538 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 MVKQ03426 396 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 GALNT18Q6P9A2 607 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 CYP20A1Q6UW02 462 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 SLC16A12Q6ZSM3 486 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 STAG3L4Q8TBR4 150 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 SEPT8Q92599 483 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 RPL3LQ92901 407 aaKnown RBP10.53□□□□□ -0.72
USP28-201ENST00000003302 RHBDF1Q96CC6 855 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 BTN2A3PQ96KV6 586 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 GLT1D1Q96MS3 346 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 APOL5Q9BWW9 433 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 ANAPC2Q9UJX6 822 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 PCDHB9Q9Y5E1 797 aa10.53□□□□□ -0.72
USP28-201ENST00000003302 LCHNA4D1U4 455 aa10.52□□□□□ -0.72
USP28-201ENST00000003302 GLTPD2A6NH11 291 aa10.52□□□□□ -0.72
USP28-201ENST00000003302 PRAMEF4O60810 478 aa10.52□□□□□ -0.72
USP28-201ENST00000003302 EEDO75530 441 aaKnown RBP10.52□□□□□ -0.72
USP28-201ENST00000003302 MYCP01106 439 aaPredicted RBP10.52□□□□□ -0.72
USP28-201ENST00000003302 MAP2K4P45985 399 aa10.52□□□□□ -0.72
USP28-201ENST00000003302 CD47Q08722 323 aa10.52□□□□□ -0.72
USP28-201ENST00000003302 CRHR2Q13324 411 aa10.52□□□□□ -0.72
USP28-201ENST00000003302 NR6A1Q15406 480 aa10.52□□□□□ -0.72
USP28-201ENST00000003302 AP5B1Q2VPB7 878 aa10.52□□□□□ -0.72
USP28-201ENST00000003302 PRAMEF9Q5VWM5 478 aa10.52□□□□□ -0.72
USP28-201ENST00000003302 RGMBQ6NW40 437 aa10.52□□□□□ -0.72
USP28-201ENST00000003302 Q6ZNX1 250 aa10.52□□□□□ -0.72
USP28-201ENST00000003302 PATL1Q86TB9 770 aaKnown RBP10.52□□□□□ -0.72
USP28-201ENST00000003302 ZSWIM9Q86XI8 627 aa10.52□□□□□ -0.72
USP28-201ENST00000003302 PTRH1Q86Y79 214 aaKnown RBP10.52□□□□□ -0.72
USP28-201ENST00000003302 METTL6Q8TCB7 284 aa10.52□□□□□ -0.72
USP28-201ENST00000003302 ZC3H15Q8WU90 426 aaKnown RBP10.52□□□□□ -0.72
USP28-201ENST00000003302 FAR2Q96K12 515 aa10.52□□□□□ -0.72
USP28-201ENST00000003302 HOPXQ9BPY8 73 aaPredicted RBP10.52□□□□□ -0.72
USP28-201ENST00000003302 TIMMDC1Q9NPL8 285 aa10.52□□□□□ -0.72
USP28-201ENST00000003302 AGO1Q9UL18 857 aaKnown RBP10.52□□□□□ -0.72
USP28-201ENST00000003302 TNPO2O14787 897 aaKnown RBP10.52□□□□□ -0.73
USP28-201ENST00000003302 ZNF623O75123 536 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 PRKD3O94806 890 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 IDO1P14902 403 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 CR2P20023 1033 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 IL10P22301 178 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 CD6P30203 668 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 CARTPTQ16568 116 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 CTXN3Q4LDR2 81 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 MRNIPQ6NTE8 343 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 SPESP1Q6UW49 350 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 GOLGA7Q7Z5G4 137 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 RHEBL1Q8TAI7 183 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 TRMOQ9BU70 441 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 HIPK3Q9H422 1215 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 TFB2MQ9H5Q4 396 aaKnown RBP10.52□□□□□ -0.73
USP28-201ENST00000003302 TAS2R13Q9NYV9 303 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 SCN8AQ9UQD0 1980 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 A0A087WXM4 84 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 ADAMTS4O75173 837 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 NDUFS3O75489 264 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 SERPINF2P08697 491 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 FAM163BP0C2L3 166 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 CYP2C18P33260 490 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 HUNKP57058 714 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 IL10RBQ08334 325 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 KCNAB2Q13303 367 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 DOC2BQ14184 412 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 TAS2R42Q7RTR8 314 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 ZFAND4Q86XD8 727 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 HM13Q8TCT9 377 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 NETO1Q8TDF5 533 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 FKBP10Q96AY3 582 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 BRINP2Q9C0B6 783 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 DERL2Q9GZP9 239 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 FREM2Q5SZK8 3169 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 C1orf232A0A0U1RR37 186 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 SH3PXD2BA1X283 911 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 MTMR11A4FU01 709 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 SNX2O60749 519 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 HSPA8P11142 646 aaKnown RBP10.52□□□□□ -0.73
USP28-201ENST00000003302 DCKP27707 260 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 OPRL1P41146 370 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 POLD2P49005 469 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 DSC1Q08554 894 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 TRAF3Q13114 568 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 GPNMBQ14956 572 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 TRAF7Q6Q0C0 670 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 CEP68Q76N32 757 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 FAM126BQ8IXS8 530 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 SMYD1Q8NB12 490 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 OR13F1Q8NGS4 319 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 THAP11Q96EK4 314 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 MIR1-1HGQ9H1L0 117 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 FAM8A1Q9UBU6 413 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 BCAP29Q9UHQ4 241 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 RAI2Q9Y5P3 530 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 PMF1-BGLAPU3KQ54 211 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 KNL1Q8NG31 2342 aa10.52□□□□□ -0.73
USP28-201ENST00000003302 DRGXA6NNA5 263 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 IGLV3-27P01718 113 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 EMX2Q04743 252 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 TWF1Q12792 350 aa10.51□□□□□ -0.73
USP28-201ENST00000003302 SOWAHCQ53LP3 525 aaPredicted RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms