RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 KIAA0040Q15053 153 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 PTPRRQ15256 657 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 SMU1Q2TAY7 513 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 PYCR3Q53H96 274 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 GTF2H2CQ6P1K8 395 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 IL27RAQ6UWB1 636 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 TAS2R42Q7RTR8 314 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 TAS1R1Q7RTX1 841 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 CLVS1Q8IUQ0 354 aaPredicted RBP12.58□□□□□ -0.4
LINC00540-203ENST00000631321 CARNMT1Q8N4J0 409 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 DTWD1Q8N5C7 304 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 AADATQ8N5Z0 425 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 DCBLD1Q8N8Z6 715 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 OR8J3Q8NGG0 315 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 ZNF420Q8TAQ5 688 aaPredicted RBP12.58□□□□□ -0.4
LINC00540-203ENST00000631321 TMEM175Q9BSA9 504 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 TRIM64BA6NI03 449 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 IQCF5A8MTL0 148 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 H0Y858 1186 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 GLUD1P00367 558 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 OTCP00480 354 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 GALTP07902 379 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 GGT1P19440 569 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 MSH3P20585 1137 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 TRAF3Q13114 568 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 INO80DQ53TQ3 878 aaPredicted RBP12.58□□□□□ -0.4
LINC00540-203ENST00000631321 SLC8B1Q6J4K2 584 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 OR4F6Q8NGB9 312 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 MAGEE2Q8TD90 523 aaPredicted RBP12.58□□□□□ -0.4
LINC00540-203ENST00000631321 LZICQ8WZA0 190 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 EID2BQ96D98 161 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 GLT1D1Q96MS3 346 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 HIPK3Q9H422 1215 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 MAGEE1Q9HCI5 957 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 SARS2Q9NP81 518 aaKnown RBP12.58□□□□□ -0.4
LINC00540-203ENST00000631321 TLR9Q9NR96 1032 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 HCSTQ9UBK5 93 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 PKP3Q9Y446 797 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 PCDHGA11Q9Y5H2 935 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 ADAM12O43184 909 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 SNAP29O95721 258 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 CLIC3O95833 236 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 ANXA6P08133 673 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 RAP2AP10114 183 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 ELNP15502 786 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 HMGA1P17096 107 aaKnown RBP12.57□□□□□ -0.4
LINC00540-203ENST00000631321 DCKP27707 260 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 HMGCLP35914 325 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 TUFMP49411 452 aaKnown RBP12.57□□□□□ -0.4
LINC00540-203ENST00000631321 HLCSP50747 726 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 SELPLGQ14242 412 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 C18orf21Q32NC0 220 aaPredicted RBP12.57□□□□□ -0.4
LINC00540-203ENST00000631321 CCNYL2Q5T2Q4 361 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 TBPL2Q6SJ96 375 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 PRSS55Q6UWB4 352 aaPredicted RBP12.57□□□□□ -0.4
LINC00540-203ENST00000631321 FRA10AC1Q70Z53 315 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 LYSMD3Q7Z3D4 306 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 RALGPS2Q86X27 583 aaPredicted RBP12.57□□□□□ -0.4
LINC00540-203ENST00000631321 TERB1Q8NA31 727 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 FBXO22Q8NEZ5 403 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 PNPT1Q8TCS8 783 aaKnown RBP12.57□□□□□ -0.4
LINC00540-203ENST00000631321 C12orf43Q96C57 262 aaKnown RBP12.57□□□□□ -0.4
LINC00540-203ENST00000631321 CNDP2Q96KP4 475 aaKnown RBP12.57□□□□□ -0.4
LINC00540-203ENST00000631321 PPP3R2Q96LZ3 170 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 RNF145Q96MT1 663 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 SEPHS2Q99611 448 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 C19orf43Q9BQ61 176 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 EBF1Q9UH73 591 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 STOML2Q9UJZ1 356 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 SLC30A1Q9Y6M5 507 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 RAD51BO15315 384 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 FFAR2O15552 330 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 DEAF1O75398 565 aaPredicted RBP12.57□□□□□ -0.4
LINC00540-203ENST00000631321 SEC24DO94855 1032 aaPredicted RBP12.57□□□□□ -0.4
LINC00540-203ENST00000631321 CAP1Q01518 475 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 CBX2Q14781 532 aaPredicted RBP12.57□□□□□ -0.4
LINC00540-203ENST00000631321 ABRAXAS2Q15018 415 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 NR6A1Q15406 480 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 AP5B1Q2VPB7 878 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 FKBP9P1Q75LS8 142 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 LRRC8DQ7L1W4 858 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 TMEM173Q86WV6 379 aaPredicted RBP12.57□□□□□ -0.4
LINC00540-203ENST00000631321 OFCC1Q8IZS5 231 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 BCL7CQ8WUZ0 217 aaPredicted RBP12.57□□□□□ -0.4
LINC00540-203ENST00000631321 VPS50Q96JG6 964 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 PPM1MQ96MI6 270 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 KLF16Q9BXK1 252 aaPredicted RBP12.57□□□□□ -0.4
LINC00540-203ENST00000631321 GORASP2Q9H8Y8 452 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 CXorf21Q9HAI6 301 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 GKN1Q9NS71 199 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 PKD2L2Q9NZM6 624 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 ZNHIT2Q9UHR6 403 aa12.57□□□□□ -0.4
LINC00540-203ENST00000631321 A0A0U1RQS6 177 aa12.56□□□□□ -0.4
LINC00540-203ENST00000631321 GAPDHSO14556 408 aaPredicted RBP12.56□□□□□ -0.4
LINC00540-203ENST00000631321 GPR39O43194 453 aa12.56□□□□□ -0.4
LINC00540-203ENST00000631321 TSPAN3O60637 253 aa12.56□□□□□ -0.4
LINC00540-203ENST00000631321 RSL1D1O76021 490 aaKnown RBP12.56□□□□□ -0.4
LINC00540-203ENST00000631321 PRAMEF12O95522 483 aa12.56□□□□□ -0.4
LINC00540-203ENST00000631321 MT-ND1P03886 318 aa12.56□□□□□ -0.4
LINC00540-203ENST00000631321 S100BP04271 92 aaPredicted RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms