RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 BBS9Q3SYG4 887 aa25.27■■□□□ 1.64
TRIM28-204ENST00000594806 NEPROQ6NW34 567 aa25.27■■□□□ 1.64
TRIM28-204ENST00000594806 SPRED1Q7Z699 444 aa25.27■■□□□ 1.64
TRIM28-204ENST00000594806 OTUD6BQ8N6M0 293 aa25.27■■□□□ 1.64
TRIM28-204ENST00000594806 DCBLD1Q8N8Z6 715 aa25.27■■□□□ 1.64
TRIM28-204ENST00000594806 DEPDC7Q96QD5 511 aa25.27■■□□□ 1.64
TRIM28-204ENST00000594806 POT1Q9NUX5 634 aa25.27■■□□□ 1.64
TRIM28-204ENST00000594806 MARCH4Q9P2E8 410 aaPredicted RBP25.27■■□□□ 1.64
TRIM28-204ENST00000594806 RABGEF1Q9UJ41 708 aa25.27■■□□□ 1.64
TRIM28-204ENST00000594806 TRBV23OR9-2A0A075B6M9 112 aa25.26■■□□□ 1.63
TRIM28-204ENST00000594806 TP73O15350 636 aa25.26■■□□□ 1.63
TRIM28-204ENST00000594806 BRAFP15056 766 aa25.26■■□□□ 1.63
TRIM28-204ENST00000594806 RPS3P23396 243 aaKnown RBP eCLIP25.26■■□□□ 1.634e-21■■■□□ 16.6
TRIM28-204ENST00000594806 RPL10P27635 214 aaKnown RBP25.26■■□□□ 1.63
TRIM28-204ENST00000594806 UBE2IP63279 158 aaKnown RBP25.26■■□□□ 1.63
TRIM28-204ENST00000594806 THOC5Q13769 683 aaKnown RBP25.26■■□□□ 1.63
TRIM28-204ENST00000594806 SPIDRQ14159 915 aa25.26■■□□□ 1.63
TRIM28-204ENST00000594806 TYSND1Q2T9J0 566 aa25.26■■□□□ 1.63
TRIM28-204ENST00000594806 SPANXN3Q5MJ09 141 aa25.26■■□□□ 1.63
TRIM28-204ENST00000594806 C8orf74Q6P047 294 aa25.26■■□□□ 1.63
TRIM28-204ENST00000594806 CCNI2Q6ZMN8 369 aaPredicted RBP25.26■■□□□ 1.63
TRIM28-204ENST00000594806 MICALCLQ6ZW33 695 aa25.26■■□□□ 1.63
TRIM28-204ENST00000594806 TRIM48Q8IWZ4 208 aa25.26■■□□□ 1.63
TRIM28-204ENST00000594806 CFAP206Q8IYR0 622 aa25.26■■□□□ 1.63
TRIM28-204ENST00000594806 MMGT1Q8N4V1 131 aa25.26■■□□□ 1.63
TRIM28-204ENST00000594806 SERBP1Q8NC51 408 aaKnown RBP eCLIP25.26■■□□□ 1.632e-7■■■■■ 48.3
TRIM28-204ENST00000594806 SLC38A3Q99624 504 aa25.26■■□□□ 1.63
TRIM28-204ENST00000594806 CARD6Q9BX69 1037 aa25.26■■□□□ 1.63
TRIM28-204ENST00000594806 PRSS21Q9Y6M0 314 aa25.26■■□□□ 1.63
TRIM28-204ENST00000594806 BPTFQ12830 3046 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 CTAGE15A4D2H0 777 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 LIN7AO14910 233 aaPredicted RBP25.25■■□□□ 1.63
TRIM28-204ENST00000594806 OR1I1O60431 355 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 VIPP01282 170 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 CTAGE8P0CG41 777 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 EPHA4P54764 986 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 ADARP55265 1226 aaKnown RBP25.25■■□□□ 1.63
TRIM28-204ENST00000594806 CCL7P80098 99 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 GPLD1P80108 840 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 SQSTM1Q13501 440 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 SEPT7Q16181 437 aaKnown RBP25.25■■□□□ 1.63
TRIM28-204ENST00000594806 MSS51Q4VC12 460 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 RBM44Q6ZP01 1051 aaKnown RBP25.25■■□□□ 1.63
TRIM28-204ENST00000594806 FAM83HQ6ZRV2 1179 aaPredicted RBP25.25■■□□□ 1.63
TRIM28-204ENST00000594806 CTAGE6Q86UF2 777 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 CTAGE4Q8IX94 777 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 CXorf40BQ96DE9 158 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 GFM1Q96RP9 751 aaKnown RBP25.25■■□□□ 1.63
TRIM28-204ENST00000594806 DPYSL5Q9BPU6 564 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 DPH5Q9H2P9 285 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 EPB41L1Q9H4G0 881 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 COG4Q9H9E3 785 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 SCHIP1Q9P0W5 487 aaPredicted RBP25.25■■□□□ 1.63
TRIM28-204ENST00000594806 ZNF624Q9P2J8 865 aaPredicted RBP25.25■■□□□ 1.63
TRIM28-204ENST00000594806 KLK13Q9UKR3 277 aa25.25■■□□□ 1.63
TRIM28-204ENST00000594806 E7ESA3 106 aa25.24■■□□□ 1.63
TRIM28-204ENST00000594806 TMX2-CTNND1H3BSU7 103 aa25.24■■□□□ 1.63
TRIM28-204ENST00000594806 TOP3BO95985 862 aaKnown RBP25.24■■□□□ 1.63
TRIM28-204ENST00000594806 RPLP0P05388 317 aaKnown RBP25.24■■□□□ 1.63
TRIM28-204ENST00000594806 SLC19A1P41440 591 aa25.24■■□□□ 1.63
TRIM28-204ENST00000594806 MRPS25P82663 173 aaKnown RBP25.24■■□□□ 1.63
TRIM28-204ENST00000594806 CRYMQ14894 314 aa25.24■■□□□ 1.63
TRIM28-204ENST00000594806 CLCA4Q14CN2 919 aa25.24■■□□□ 1.63
TRIM28-204ENST00000594806 ZNF658BQ4V348 819 aaPredicted RBP25.24■■□□□ 1.63
TRIM28-204ENST00000594806 CILP2Q8IUL8 1156 aa25.24■■□□□ 1.63
TRIM28-204ENST00000594806 CEP112Q8N8E3 955 aa25.24■■□□□ 1.63
TRIM28-204ENST00000594806 Q8N9G6 341 aaPredicted RBP25.24■■□□□ 1.63
TRIM28-204ENST00000594806 ZFPM2Q8WW38 1151 aa25.24■■□□□ 1.63
TRIM28-204ENST00000594806 PANX3Q96QZ0 392 aa25.24■■□□□ 1.63
TRIM28-204ENST00000594806 C20orf96Q9NUD7 363 aaPredicted RBP25.24■■□□□ 1.63
TRIM28-204ENST00000594806 INTS10Q9NVR2 710 aaKnown RBP25.24■■□□□ 1.63
TRIM28-204ENST00000594806 KCNK4Q9NYG8 393 aa25.24■■□□□ 1.63
TRIM28-204ENST00000594806 GNPTGQ9UJJ9 305 aa25.24■■□□□ 1.63
TRIM28-204ENST00000594806 WDR37Q9Y2I8 494 aa25.24■■□□□ 1.63
TRIM28-204ENST00000594806 PCDHB1Q9Y5F3 818 aa25.24■■□□□ 1.63
TRIM28-204ENST00000594806 TEX264Q9Y6I9 313 aa25.24■■□□□ 1.63
TRIM28-204ENST00000594806 A0A1W2PQM1 296 aa25.23■■□□□ 1.63
TRIM28-204ENST00000594806 LILRA5A6NI73 299 aa25.23■■□□□ 1.63
TRIM28-204ENST00000594806 H3BMM5 538 aa25.23■■□□□ 1.63
TRIM28-204ENST00000594806 EIF3HO15372 352 aaKnown RBP eCLIP25.23■■□□□ 1.632e-12■■□□□ 11.9
TRIM28-204ENST00000594806 B4GAT1O43505 415 aa25.23■■□□□ 1.63
TRIM28-204ENST00000594806 SLC35G4P0C7Q5 338 aa25.23■■□□□ 1.63
TRIM28-204ENST00000594806 ALDH4A1P30038 563 aa25.23■■□□□ 1.63
TRIM28-204ENST00000594806 CD151P48509 253 aa25.23■■□□□ 1.63
TRIM28-204ENST00000594806 GLE1Q53GS7 698 aaKnown RBP25.23■■□□□ 1.63
TRIM28-204ENST00000594806 CENPUQ71F23 418 aa25.23■■□□□ 1.63
TRIM28-204ENST00000594806 LDB1Q86U70 411 aaPredicted RBP25.23■■□□□ 1.63
TRIM28-204ENST00000594806 NAT14Q8WUY8 206 aa25.23■■□□□ 1.63
TRIM28-204ENST00000594806 TRIM56Q9BRZ2 755 aaKnown RBP25.23■■□□□ 1.63
TRIM28-204ENST00000594806 FAM167BQ9BTA0 163 aa25.23■■□□□ 1.63
TRIM28-204ENST00000594806 PHACTR1Q9C0D0 580 aa25.23■■□□□ 1.63
TRIM28-204ENST00000594806 P2RY12Q9H244 342 aa25.23■■□□□ 1.63
TRIM28-204ENST00000594806 ZC3H7BQ9UGR2 993 aaKnown RBP25.23■■□□□ 1.63
TRIM28-204ENST00000594806 HEBP2Q9Y5Z4 205 aa25.23■■□□□ 1.63
TRIM28-204ENST00000594806 GOLGA8KD6RF30 607 aa25.22■■□□□ 1.63
TRIM28-204ENST00000594806 GOLGA8TH3BQL2 631 aa25.22■■□□□ 1.63
TRIM28-204ENST00000594806 KPNA5O15131 536 aa25.22■■□□□ 1.63
TRIM28-204ENST00000594806 CPNE6O95741 557 aa25.22■■□□□ 1.63
TRIM28-204ENST00000594806 ELK3P41970 407 aa25.22■■□□□ 1.63
TRIM28-204ENST00000594806 OR1D5P58170 312 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms