RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 AKT2P31751 481 aa30.05■■■□□ 2.4
CTCF-203ENST00000566078 TSNQ15631 228 aaKnown RBP30.05■■■□□ 2.4
CTCF-203ENST00000566078 CHI3L2Q15782 390 aa30.05■■■□□ 2.4
CTCF-203ENST00000566078 SYTL3Q4VX76 610 aa30.05■■■□□ 2.4
CTCF-203ENST00000566078 TRIM42Q8IWZ5 723 aa30.05■■■□□ 2.4
CTCF-203ENST00000566078 EXT2Q93063 718 aa30.05■■■□□ 2.4
CTCF-203ENST00000566078 MANSC1Q9H8J5 431 aa30.05■■■□□ 2.4
CTCF-203ENST00000566078 EBF2Q9HAK2 575 aa30.05■■■□□ 2.4
CTCF-203ENST00000566078 PSD3Q9NYI0 1048 aa30.05■■■□□ 2.4
CTCF-203ENST00000566078 GPR34Q9UPC5 381 aa30.05■■■□□ 2.4
CTCF-203ENST00000566078 POM121BA6NF01 834 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 K7ESF4 209 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 CACNB4O00305 520 aaPredicted RBP30.04■■■□□ 2.4
CTCF-203ENST00000566078 DCXO43602 365 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 SEC24CP53992 1094 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 GBX1Q14549 363 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 ZNF547Q8IVP9 402 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 RNF112Q9ULX5 631 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 EIF3FO00303 357 aaPredicted RBP30.04■■■□□ 2.4
CTCF-203ENST00000566078 NUAK1O60285 661 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 KERAO60938 352 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 ENO3P13929 434 aaPredicted RBP30.04■■■□□ 2.4
CTCF-203ENST00000566078 KCNC1P48547 511 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 PLA2G4EQ3MJ16 856 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 RGS9BPQ6ZS82 235 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 PPP1R14CQ8TAE6 165 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 STAG3L4Q8TBR4 150 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 ASZ1Q8WWH4 475 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 BIRC7Q96CA5 298 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 ATOH8Q96SQ7 321 aa30.04■■■□□ 2.4
CTCF-203ENST00000566078 PCYT1BQ9Y5K3 369 aaPredicted RBP30.04■■■□□ 2.4
CTCF-203ENST00000566078 NCOR1O75376 2440 aa30.03■■■□□ 2.4
CTCF-203ENST00000566078 CHUKO15111 745 aa30.03■■■□□ 2.4
CTCF-203ENST00000566078 DLX3O60479 287 aa30.03■■■□□ 2.4
CTCF-203ENST00000566078 NDUFS2O75306 463 aa30.03■■■□□ 2.4
CTCF-203ENST00000566078 VIMP08670 466 aaKnown RBP30.03■■■□□ 2.4
CTCF-203ENST00000566078 FGF3P11487 239 aaPredicted RBP30.03■■■□□ 2.4
CTCF-203ENST00000566078 GCNT7Q6ZNI0 430 aa30.03■■■□□ 2.4
CTCF-203ENST00000566078 ZCCHC23Q6ZST2 131 aa30.03■■■□□ 2.4
CTCF-203ENST00000566078 LRRTM4Q86VH4 590 aa30.03■■■□□ 2.4
CTCF-203ENST00000566078 SREK1Q8WXA9 508 aaKnown RBP30.03■■■□□ 2.4
CTCF-203ENST00000566078 CHMP6Q96FZ7 201 aa30.03■■■□□ 2.4
CTCF-203ENST00000566078 ZNF317Q96PQ6 595 aaPredicted RBP30.03■■■□□ 2.4
CTCF-203ENST00000566078 UHRF1Q96T88 793 aaPredicted RBP30.03■■■□□ 2.4
CTCF-203ENST00000566078 OXSMQ9NWU1 459 aa30.03■■■□□ 2.4
CTCF-203ENST00000566078 INVSQ9Y283 1065 aa30.03■■■□□ 2.4
CTCF-203ENST00000566078 CACNA1IQ9P0X4 2223 aa30.02■■■□□ 2.4
CTCF-203ENST00000566078 GMNCA6NCL1 334 aa30.02■■■□□ 2.4
CTCF-203ENST00000566078 H0Y8X5 98 aa30.02■■■□□ 2.4
CTCF-203ENST00000566078 VRK3Q8IV63 474 aa30.02■■■□□ 2.4
CTCF-203ENST00000566078 RAB3IL1Q8TBN0 382 aa30.02■■■□□ 2.4
CTCF-203ENST00000566078 LINC00615Q96LM1 132 aaPredicted RBP30.02■■■□□ 2.4
CTCF-203ENST00000566078 EPN3Q9H201 632 aa30.02■■■□□ 2.4
CTCF-203ENST00000566078 SPATA6Q9NWH7 488 aaPredicted RBP30.02■■■□□ 2.4
CTCF-203ENST00000566078 CDYLQ9Y232 598 aa30.02■■■□□ 2.4
CTCF-203ENST00000566078 PRKAB1Q9Y478 270 aa30.02■■■□□ 2.4
CTCF-203ENST00000566078 BDP1A6H8Y1 2624 aa30.02■■■□□ 2.4
CTCF-203ENST00000566078 NEMP2A6NFY4 417 aa30.01■■■□□ 2.39
CTCF-203ENST00000566078 SRRM3A6NNA2 597 aaPredicted RBP30.01■■■□□ 2.39
CTCF-203ENST00000566078 GPR89AB7ZAQ6 455 aa30.01■■■□□ 2.39
CTCF-203ENST00000566078 AXIN1O15169 862 aa30.01■■■□□ 2.39
CTCF-203ENST00000566078 GPC4O75487 556 aa30.01■■■□□ 2.39
CTCF-203ENST00000566078 GPR89BP0CG08 455 aa30.01■■■□□ 2.39
CTCF-203ENST00000566078 AOC1P19801 751 aa30.01■■■□□ 2.39
CTCF-203ENST00000566078 ATP5F1P24539 256 aaPredicted RBP30.01■■■□□ 2.39
CTCF-203ENST00000566078 KIAA1024LP59773 190 aa30.01■■■□□ 2.39
CTCF-203ENST00000566078 LRRC34Q8IZ02 419 aa30.01■■■□□ 2.39
CTCF-203ENST00000566078 SNX19Q92543 992 aa30.01■■■□□ 2.39
CTCF-203ENST00000566078 RABEP2Q9H5N1 569 aa30.01■■■□□ 2.39
CTCF-203ENST00000566078 UBXN8O00124 270 aa30■■■□□ 2.39
CTCF-203ENST00000566078 SMIM24O75264 130 aa30■■■□□ 2.39
CTCF-203ENST00000566078 ZNF658BQ4V348 819 aaPredicted RBP30■■■□□ 2.39
CTCF-203ENST00000566078 LIPMQ5VYY2 423 aa30■■■□□ 2.39
CTCF-203ENST00000566078 ATG16L1Q676U5 607 aa30■■■□□ 2.39
CTCF-203ENST00000566078 CYHR1Q6ZMK1 362 aa30■■■□□ 2.39
CTCF-203ENST00000566078 C11orf96Q7Z7L8 435 aa30■■■□□ 2.39
CTCF-203ENST00000566078 ADAMTSL2Q86TH1 951 aa30■■■□□ 2.39
CTCF-203ENST00000566078 LILRA3Q8N6C8 439 aaPredicted RBP30■■■□□ 2.39
CTCF-203ENST00000566078 TMEM145Q8NBT3 493 aa30■■■□□ 2.39
CTCF-203ENST00000566078 SKA2Q8WVK7 121 aaPredicted RBP30■■■□□ 2.39
CTCF-203ENST00000566078 TMEM159Q96B96 161 aa30■■■□□ 2.39
CTCF-203ENST00000566078 SPACA7Q96KW9 195 aa30■■■□□ 2.39
CTCF-203ENST00000566078 BMFQ96LC9 184 aa30■■■□□ 2.39
CTCF-203ENST00000566078 FAM126AQ9BYI3 521 aaPredicted RBP30■■■□□ 2.39
CTCF-203ENST00000566078 DMTF1Q9Y222 760 aa30■■■□□ 2.39
CTCF-203ENST00000566078 SLC17A4Q9Y2C5 497 aa30■■■□□ 2.39
CTCF-203ENST00000566078 ZBTB32Q9Y2Y4 487 aaPredicted RBP30■■■□□ 2.39
CTCF-203ENST00000566078 SLC5A10A0PJK1 596 aa30■■■□□ 2.39
CTCF-203ENST00000566078 CCDC189A1A4V9 331 aa30■■■□□ 2.39
CTCF-203ENST00000566078 A8MT66 165 aa30■■■□□ 2.39
CTCF-203ENST00000566078 SUPT3HB4E1H0 165 aa30■■■□□ 2.39
CTCF-203ENST00000566078 PRAMEF26H0Y7S4 382 aa30■■■□□ 2.39
CTCF-203ENST00000566078 KLF11O14901 512 aa30■■■□□ 2.39
CTCF-203ENST00000566078 RRP9O43818 475 aaKnown RBP30■■■□□ 2.39
CTCF-203ENST00000566078 TRIM13O60858 407 aa30■■■□□ 2.39
CTCF-203ENST00000566078 SUPT3HO75486 399 aa30■■■□□ 2.39
CTCF-203ENST00000566078 POP7O75817 140 aaKnown RBP30■■■□□ 2.39
CTCF-203ENST00000566078 HOXC4P09017 264 aaPredicted RBP30■■■□□ 2.39
CTCF-203ENST00000566078 GSTM1P09488 218 aa30■■■□□ 2.39
CTCF-203ENST00000566078 MPC1LP0DKB6 136 aa30■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms