RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 FBXL20Q96IG2 436 aa16.95■□□□□ 0.3
SPIDR-227ENST00000541342 TM6SF2Q9BZW4 377 aa16.95■□□□□ 0.3
SPIDR-227ENST00000541342 ANKRD12Q6UB98 2062 aa16.95■□□□□ 0.3
SPIDR-227ENST00000541342 GRM6O15303 877 aa16.95■□□□□ 0.3
SPIDR-227ENST00000541342 SLC4A1P02730 911 aa16.95■□□□□ 0.3
SPIDR-227ENST00000541342 STX1BP61266 288 aa16.95■□□□□ 0.3
SPIDR-227ENST00000541342 ATP6AP1Q15904 470 aa16.95■□□□□ 0.3
SPIDR-227ENST00000541342 ZBED5Q49AG3 693 aa16.95■□□□□ 0.3
SPIDR-227ENST00000541342 CAMK1DQ8IU85 385 aa16.95■□□□□ 0.3
SPIDR-227ENST00000541342 CMTM8Q8IZV2 173 aa16.95■□□□□ 0.3
SPIDR-227ENST00000541342 OR6K2Q8NGY2 324 aa16.95■□□□□ 0.3
SPIDR-227ENST00000541342 TWIST2Q8WVJ9 160 aa16.95■□□□□ 0.3
SPIDR-227ENST00000541342 CATSPERZQ9NTU4 200 aa16.95■□□□□ 0.3
SPIDR-227ENST00000541342 TUBA8Q9NY65 449 aaPredicted RBP16.95■□□□□ 0.3
SPIDR-227ENST00000541342 H3BMM5 538 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 ARPC2O15144 300 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 LYSMD3Q7Z3D4 306 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 FIBINQ8TAL6 211 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 LMLNQ96KR4 655 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 HOPXQ9BPY8 73 aaPredicted RBP16.94■□□□□ 0.3
SPIDR-227ENST00000541342 C2orf49Q9BVC5 232 aaPredicted RBP16.94■□□□□ 0.3
SPIDR-227ENST00000541342 NPLQ9BXD5 320 aaPredicted RBP16.94■□□□□ 0.3
SPIDR-227ENST00000541342 PCDHA9Q9Y5H5 950 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 ASPDHA6ND91 283 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 FZD6O60353 706 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 FGF4P08620 206 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 PSMA3P25788 255 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 VARSP26640 1264 aaKnown RBP16.94■□□□□ 0.3
SPIDR-227ENST00000541342 TMED1Q13445 227 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 KANK2Q63ZY3 851 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 TTC33Q6PID6 262 aaPredicted RBP16.94■□□□□ 0.3
SPIDR-227ENST00000541342 GPR141Q7Z602 305 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 SPRED1Q7Z699 444 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 PTGR2Q8N8N7 351 aaPredicted RBP16.94■□□□□ 0.3
SPIDR-227ENST00000541342 TRPC4APQ8TEL6 797 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 LZICQ8WZA0 190 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 LRRC58Q96CX6 371 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 ADGRE3Q9BY15 652 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 SDR39U1Q9NRG7 319 aaPredicted RBP16.94■□□□□ 0.3
SPIDR-227ENST00000541342 ACTR3BQ9P1U1 418 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 GBF1Q92538 1859 aa16.94■□□□□ 0.3
SPIDR-227ENST00000541342 A0A087WXM4 84 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 UBXN8O00124 270 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 FOXD2O60548 495 aaPredicted RBP16.93■□□□□ 0.3
SPIDR-227ENST00000541342 ZNF821O75541 412 aaPredicted RBP16.93■□□□□ 0.3
SPIDR-227ENST00000541342 ATE1O95260 518 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 RHOP08100 348 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 MTHFD1P11586 935 aaKnown RBP16.93■□□□□ 0.3
SPIDR-227ENST00000541342 PFKLP17858 780 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 FDXRP22570 491 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 NTHL1P78549 312 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 MAP7D1Q3KQU3 841 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 TEX37Q96LM6 180 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 MID1IP1Q9NPA3 183 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 ZNHIT2Q9UHR6 403 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 PTBP2Q9UKA9 531 aaKnown RBP16.93■□□□□ 0.3
SPIDR-227ENST00000541342 SEC24DO94855 1032 aaPredicted RBP16.93■□□□□ 0.3
SPIDR-227ENST00000541342 PRAMEF12O95522 483 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 SLC26A3P40879 764 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 ZFP36L2P47974 494 aaKnown RBP16.93■□□□□ 0.3
SPIDR-227ENST00000541342 TYSND1Q2T9J0 566 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 MRNIPQ6NTE8 343 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 MIER2Q8N344 545 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 EFHBQ8N7U6 833 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 ITFG2Q969R8 447 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 KIAA1522Q9P206 1035 aaPredicted RBP16.93■□□□□ 0.3
SPIDR-227ENST00000541342 POLG2Q9UHN1 485 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 NDUFAF1Q9Y375 327 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 PCDHB9Q9Y5E1 797 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 TCRBV5S2A0A599 114 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 PTPN2P17706 415 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 CTSOP43234 321 aaPredicted RBP16.93■□□□□ 0.3
SPIDR-227ENST00000541342 STC1P52823 247 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 PMS2P3Q13401 168 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 PLEKHG6Q3KR16 790 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 ABTB1Q969K4 478 aaPredicted RBP16.93■□□□□ 0.3
SPIDR-227ENST00000541342 DCUN1D5Q9BTE7 237 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 OSBPL6Q9BZF3 934 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 CDH7Q9ULB5 785 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 HCFC2Q9Y5Z7 792 aa16.93■□□□□ 0.3
SPIDR-227ENST00000541342 C2orf81A6NN90 581 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 C5orf67F2Z3F1 127 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 RASAL1O95294 804 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 GFAPP14136 432 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 GKP32189 559 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 CDKN1CP49918 316 aaPredicted RBP16.92■□□□□ 0.3
SPIDR-227ENST00000541342 DIO3P55073 304 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 ANKDD1AQ495B1 522 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 RETSATQ6NUM9 610 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 TMEM25Q86YD3 366 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 OFCC1Q8IZS5 231 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 TTC30BQ8N4P2 665 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 ACDQ96AP0 544 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 CENPNQ96H22 339 aaPredicted RBP16.92■□□□□ 0.3
SPIDR-227ENST00000541342 BPIFA1Q9NP55 256 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 BTRCQ9Y297 605 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 GRXCR1A8MXD5 290 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 EI24O14681 340 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 AZIN1O14977 448 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 CLASP2O75122 1294 aaKnown RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms