RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 FAM53AQ6NSI3 398 aaPredicted RBP3.71□□□□□ -1.82
CD44-217ENST00000525348 RBMS3Q6XE24 437 aaKnown RBP3.71□□□□□ -1.82
CD44-217ENST00000525348 PCGF5Q86SE9 256 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 C1orf52Q8N6N3 182 aaKnown RBP3.71□□□□□ -1.82
CD44-217ENST00000525348 CNBD1Q8NA66 436 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 C1orf131Q8NDD1 294 aaKnown RBP3.71□□□□□ -1.82
CD44-217ENST00000525348 ZNF473Q8WTR7 871 aaKnown RBP3.71□□□□□ -1.82
CD44-217ENST00000525348 UCMAQ8WVF2 138 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 GAD1Q99259 594 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 PSD2Q9BQI7 771 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 UNC45AQ9H3U1 944 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 RCC2Q9P258 522 aaKnown RBP3.71□□□□□ -1.82
CD44-217ENST00000525348 RAD54L2Q9Y4B4 1467 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 FRMD3A2A2Y4 597 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 TMEM189-UBE2V1I3L0A0 370 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 J3QR06 171 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 PLK4O00444 970 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 SCAMP1O15126 338 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 BUD23O43709 281 aaKnown RBP3.7□□□□□ -1.82
CD44-217ENST00000525348 RNASEH2AO75792 299 aaKnown RBP3.7□□□□□ -1.82
CD44-217ENST00000525348 OR2C1O95371 312 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 NR3C1P04150 777 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 CDH2P19022 906 aaPredicted RBP3.7□□□□□ -1.82
CD44-217ENST00000525348 MSH2P43246 934 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 TNNT2P45379 298 aaPredicted RBP3.7□□□□□ -1.82
CD44-217ENST00000525348 TFAP4Q01664 338 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 UBE2V1Q13404 147 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 PPIGQ13427 754 aaKnown RBP eCLIP3.7□□□□□ -1.82
CD44-217ENST00000525348 FCN2Q15485 313 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 ACSM2BQ68CK6 577 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 HAUS3Q68CZ6 603 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 KIAA0930Q6ICG6 404 aaPredicted RBP3.7□□□□□ -1.82
CD44-217ENST00000525348 PACS1Q6VY07 963 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 C15orf39Q6ZRI6 1047 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 ZNF534Q76KX8 674 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 ZNF843Q8N446 348 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 WDTC1Q8N5D0 677 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 PDILTQ8N807 584 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 GSDMBQ8TAX9 411 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 WBP2Q969T9 261 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 AGAP3Q96P47 875 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 PLK3Q9H4B4 646 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 BICC1Q9H694 974 aaKnown RBP3.7□□□□□ -1.82
CD44-217ENST00000525348 SUDS3Q9H7L9 328 aaPredicted RBP3.7□□□□□ -1.82
CD44-217ENST00000525348 PAG1Q9NWQ8 432 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 TRMT1Q9NXH9 659 aaKnown RBP3.7□□□□□ -1.82
CD44-217ENST00000525348 PTTG2Q9NZH5 202 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 DNAJB4Q9UDY4 337 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 SWAP70Q9UH65 585 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 JRKLQ9Y4A0 524 aa3.7□□□□□ -1.82
CD44-217ENST00000525348 CEP164Q9UPV0 1460 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 NOTCH3Q9UM47 2321 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 TDRD9Q8NDG6 1382 aaKnown RBP3.69□□□□□ -1.82
CD44-217ENST00000525348 SLC22A2O15244 555 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 MBD4O95243 580 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 BMP10O95393 424 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 DDX58O95786 925 aaKnown RBP3.69□□□□□ -1.82
CD44-217ENST00000525348 HIST1H2ABP04908 130 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 ZNF853P0CG23 659 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 PRSS56P0CW18 603 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 NEFHP12036 1026 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 HIST1H2ADP20671 130 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 MAN1A1P33908 653 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 RIPK4P57078 832 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 PCGF3Q3KNV8 242 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 MFSD4BQ5TF39 518 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 KLHL35Q6PF15 583 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 HIST3H2AQ7L7L0 130 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 PTOV1Q86YD1 416 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 GALNT13Q8IUC8 556 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 PAF1Q8N7H5 531 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 PRMT6Q96LA8 375 aaPredicted RBP3.69□□□□□ -1.82
CD44-217ENST00000525348 RSPH9Q9H1X1 276 aaPredicted RBP3.69□□□□□ -1.82
CD44-217ENST00000525348 SEMA6AQ9H2E6 1030 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 PELI2Q9HAT8 420 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 APOBEC3GQ9HC16 384 aaKnown RBP3.69□□□□□ -1.82
CD44-217ENST00000525348 ZBTB20Q9HC78 741 aaPredicted RBP3.69□□□□□ -1.82
CD44-217ENST00000525348 DIAPH3Q9NSV4 1193 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 SMC4Q9NTJ3 1288 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 OLA1Q9NTK5 396 aaKnown RBP3.69□□□□□ -1.82
CD44-217ENST00000525348 MTMR6Q9Y217 621 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 YIPF1Q9Y548 306 aa3.69□□□□□ -1.82
CD44-217ENST00000525348 A0A1W2PR77 199 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 BICDL2A1A5D9 508 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 DUXAA6NLW8 204 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 PCDH7O60245 1069 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 USO1O60763 962 aaKnown RBP3.68□□□□□ -1.82
CD44-217ENST00000525348 ZNF883P0CG24 379 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 GABRB1P18505 474 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 CHMP24386 653 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 TM4SF1P30408 202 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 CHRNB4P30926 498 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 HOXC8P31273 242 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 TRPC1P48995 793 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 NR2C2P49116 596 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 DUOXA1Q1HG43 343 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 DNAJC21Q5F1R6 531 aaKnown RBP3.68□□□□□ -1.82
CD44-217ENST00000525348 RARS2Q5T160 578 aaKnown RBP3.68□□□□□ -1.82
CD44-217ENST00000525348 NDUFAF5Q5TEU4 345 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 CCDC70Q6NSX1 233 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms