RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ZNF140P52738 457 aaPredicted RBP7.91□□□□□ -1.14
USP40-216ENST00000485943 MAZP56270 477 aaKnown RBP7.91□□□□□ -1.14
USP40-216ENST00000485943 ARL4CP56559 192 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 PRKAA1Q13131 559 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 BOP1Q14137 746 aaKnown RBP7.91□□□□□ -1.14
USP40-216ENST00000485943 PTPRCAPQ14761 206 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 BBS9Q3SYG4 887 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 SNAP47Q5SQN1 464 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 TSTD2Q5T7W7 516 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 RNF187Q5TA31 235 aaPredicted RBP7.91□□□□□ -1.14
USP40-216ENST00000485943 PAPD7Q5XG87 772 aaKnown RBP7.91□□□□□ -1.14
USP40-216ENST00000485943 ALKBH2Q6NS38 261 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 TRIM46Q7Z4K8 759 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 ADGRG6Q86SQ4 1221 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 JAMLQ86YT9 394 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 CFAP206Q8IYR0 622 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 NXPE1Q8N323 547 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 C17orf53Q8N3J3 647 aaPredicted RBP7.91□□□□□ -1.14
USP40-216ENST00000485943 DDHD1Q8NEL9 900 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 GPBAR1Q8TDU6 330 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 ELMO1Q92556 727 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 PEX13Q92968 403 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 TMEM159Q96B96 161 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 SGF29Q96ES7 293 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 SNF8Q96H20 258 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 CDKN2AIPNLQ96HQ2 116 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 PANX3Q96QZ0 392 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 RANBP9Q96S59 729 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 KRT12Q99456 494 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 DPYSL5Q9BPU6 564 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 CCM2Q9BSQ5 444 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 BOCQ9BWV1 1114 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 SARS2Q9NP81 518 aaKnown RBP7.91□□□□□ -1.14
USP40-216ENST00000485943 CASS4Q9NQ75 786 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 IMP3Q9NV31 184 aaKnown RBP7.91□□□□□ -1.14
USP40-216ENST00000485943 SMOXQ9NWM0 555 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 ZDHHC3Q9NYG2 299 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 TXNDC16Q9P2K2 825 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 GNPTGQ9UJJ9 305 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 PSMD13Q9UNM6 376 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 NEUROG3Q9Y4Z2 214 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 KCTD3Q9Y597 815 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 COMMD10Q9Y6G5 202 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 OAS3Q9Y6K5 1087 aaKnown RBP7.91□□□□□ -1.14
USP40-216ENST00000485943 ARHGEF17Q96PE2 2063 aaPredicted RBP7.91□□□□□ -1.14
USP40-216ENST00000485943 ZNF292O60281 2723 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 WDR87Q6ZQQ6 2873 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 DMDP11532 3685 aa7.91□□□□□ -1.14
USP40-216ENST00000485943 SPTBN4Q9H254 2564 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 LRP4O75096 1905 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 MGAT4DA6NG13 374 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 KPNA5O15131 536 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 OPA1O60313 960 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 CSO75390 466 aaKnown RBP7.9□□□□□ -1.14
USP40-216ENST00000485943 SUN1O94901 812 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 AP2A2O94973 939 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 RPN2P04844 631 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 APOA4P06727 396 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 GSTM1P09488 218 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 ZNF16P17020 682 aaPredicted RBP7.9□□□□□ -1.14
USP40-216ENST00000485943 NDUFS1P28331 727 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 CSTF2P33240 577 aaKnown RBP eCLIP7.9□□□□□ -1.14
USP40-216ENST00000485943 SMCPP49901 116 aaPredicted RBP7.9□□□□□ -1.14
USP40-216ENST00000485943 CLCNKAP51800 687 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 DRG2P55039 364 aaKnown RBP7.9□□□□□ -1.14
USP40-216ENST00000485943 INHBCP55103 352 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 CRADDP78560 199 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 PLOD1Q02809 727 aaPredicted RBP7.9□□□□□ -1.14
USP40-216ENST00000485943 GSTM4Q03013 218 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 C2orf54Q08AI8 447 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 TARDBPQ13148 414 aaKnown RBP eCLIP7.9□□□□□ -1.14
USP40-216ENST00000485943 TUBB2AQ13885 445 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 IHHQ14623 411 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 ITIH4Q14624 930 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 BRD3Q15059 726 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 SIX1Q15475 284 aaPredicted RBP7.9□□□□□ -1.14
USP40-216ENST00000485943 CYP1B1Q16678 543 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 C3orf38Q5JPI3 329 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 KCTD11Q693B1 232 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 C8orf74Q6P047 294 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 CYB5D1Q6P9G0 228 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 LRRC69Q6ZNQ3 347 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 SLCO6A1Q86UG4 719 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 RBM12BQ8IXT5 1001 aaKnown RBP7.9□□□□□ -1.14
USP40-216ENST00000485943 LSMEM2Q8N112 164 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 ARL14Q8N4G2 192 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 BAHD1Q8TBE0 780 aaPredicted RBP7.9□□□□□ -1.14
USP40-216ENST00000485943 HM13Q8TCT9 377 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 DTX3LQ8TDB6 740 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 NCSTNQ92542 709 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 N4BP2L2Q92802 583 aaPredicted RBP7.9□□□□□ -1.14
USP40-216ENST00000485943 GRAMD1AQ96CP6 724 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 STAMBPL1Q96FJ0 436 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 C12orf66Q96MD2 445 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 FERD3LQ96RJ6 166 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 CMKLR1Q99788 373 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 C19orf43Q9BQ61 176 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 TUBB2BQ9BVA1 445 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 LRRN3Q9H3W5 708 aa7.9□□□□□ -1.14
USP40-216ENST00000485943 CCDC86Q9H6F5 360 aaKnown RBP7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms