RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 FAM98AQ8NCA5 519 aaKnown RBP7.8□□□□□ -1.16
USP54-211ENST00000474929 DENND1AQ8TEH3 1009 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 RND1Q92730 232 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 N4BP2L2Q92802 583 aaPredicted RBP7.8□□□□□ -1.16
USP54-211ENST00000474929 SNX21Q969T3 373 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 SCRN2Q96FV2 425 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 TBCBQ99426 244 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 TLR10Q9BXR5 811 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 ABCG8Q9H221 673 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 LIME1Q9H400 295 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 WDR54Q9H977 334 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 KLC4Q9NSK0 619 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 TXLNGQ9NUQ3 528 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 ZNF624Q9P2J8 865 aaPredicted RBP7.8□□□□□ -1.16
USP54-211ENST00000474929 CNTN6Q9UQ52 1028 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 L3MBTL1Q9Y468 752 aa7.8□□□□□ -1.16
USP54-211ENST00000474929 KMOO15229 486 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 ATMINO43313 823 aaPredicted RBP7.79□□□□□ -1.16
USP54-211ENST00000474929 ZNF749O43361 778 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 HPP00738 406 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 UMODP07911 640 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 PIM1P11309 404 aaPredicted RBP7.79□□□□□ -1.16
USP54-211ENST00000474929 KRT5P13647 590 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 CD44P16070 742 aaKnown RBP7.79□□□□□ -1.16
USP54-211ENST00000474929 LHCGRP22888 699 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 HSPA9P38646 679 aaKnown RBP7.79□□□□□ -1.16
USP54-211ENST00000474929 ALDH6A1Q02252 535 aaKnown RBP7.79□□□□□ -1.16
USP54-211ENST00000474929 CUL4BQ13620 913 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 ZNF789Q5FWF6 425 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 Q5PR19 223 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 ARTNQ5T4W7 220 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 PRAMEF17Q5VTA0 474 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 FBXW10Q5XX13 1052 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 MRPL14Q6P1L8 145 aaKnown RBP7.79□□□□□ -1.16
USP54-211ENST00000474929 SHC4Q6S5L8 630 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 PRSS57Q6UWY2 283 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 CHSY3Q70JA7 882 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 FAM131BQ86XD5 332 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 KBTBD2Q8IY47 623 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 TTC30BQ8N4P2 665 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 OR1L3Q8NH93 324 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 ZNF606Q8WXB4 792 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 FAM81BQ96LP2 452 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 MCCC1Q96RQ3 725 aaPredicted RBP7.79□□□□□ -1.16
USP54-211ENST00000474929 SGPP1Q9BX95 441 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 PDFQ9HBH1 243 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 SMC3Q9UQE7 1217 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 SIK3Q9Y2K2 1263 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 ZNF281Q9Y2X9 895 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 PRKAB1Q9Y478 270 aa7.79□□□□□ -1.16
USP54-211ENST00000474929 A0A0G2JK05 382 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 NKX2-6A6NCS4 301 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 A6NNC1 897 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 P4HA2O15460 535 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 FGF10O15520 208 aaPredicted RBP7.78□□□□□ -1.16
USP54-211ENST00000474929 PRAMEF11O60813 436 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 KCNJ13O60928 360 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 PALMO75781 387 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 LRIG2O94898 1065 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 ALBP02768 609 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 CDH3P22223 829 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 SOX11P35716 441 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 EPHB1P54762 984 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 PPP1CAP62136 330 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 CBLBQ13191 982 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 RBBP7Q16576 425 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 TDRD12Q587J7 1177 aaKnown RBP7.78□□□□□ -1.16
USP54-211ENST00000474929 RALGPS1Q5JS13 557 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 CERS6Q6ZMG9 384 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 ENOSF1Q7L5Y1 443 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 ARCQ7LC44 396 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 LRRTM4Q86VH4 590 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 DOLPP1Q86YN1 238 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 KRTAP1-3Q8IUG1 177 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 ZZZ3Q8IYH5 903 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 UMODL1-AS1Q8N2C9 162 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 MSANTD4Q8NCY6 345 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 LRRC46Q96FV0 321 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 UPF2Q9HAU5 1272 aaKnown RBP7.78□□□□□ -1.16
USP54-211ENST00000474929 HRASLS2Q9NWW9 162 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 SCHIP1Q9P0W5 487 aaPredicted RBP7.78□□□□□ -1.16
USP54-211ENST00000474929 TEKT2Q9UIF3 430 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 PCDHGC3Q9UN70 934 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 NEU3Q9UQ49 428 aa7.78□□□□□ -1.16
USP54-211ENST00000474929 NOTCH1P46531 2555 aa7.77□□□□□ -1.16
USP54-211ENST00000474929 GSAPA4D1B5 854 aa7.77□□□□□ -1.17
USP54-211ENST00000474929 OR5H15A6NDH6 313 aa7.77□□□□□ -1.17
USP54-211ENST00000474929 NPIPB15A6NHN6 443 aaPredicted RBP7.77□□□□□ -1.17
USP54-211ENST00000474929 ARHGAP42A6NI28 874 aa7.77□□□□□ -1.17
USP54-211ENST00000474929 OR52A4PA6NMU1 304 aa7.77□□□□□ -1.17
USP54-211ENST00000474929 FAM227AF5H4B4 570 aa7.77□□□□□ -1.17
USP54-211ENST00000474929 CES2O00748 559 aa7.77□□□□□ -1.17
USP54-211ENST00000474929 MAP2K7O14733 419 aa7.77□□□□□ -1.17
USP54-211ENST00000474929 POLR2DO15514 142 aaKnown RBP7.77□□□□□ -1.17
USP54-211ENST00000474929 TTI1O43156 1089 aa7.77□□□□□ -1.17
USP54-211ENST00000474929 PHF1O43189 567 aaPredicted RBP7.77□□□□□ -1.17
USP54-211ENST00000474929 KLRC4O43908 158 aa7.77□□□□□ -1.17
USP54-211ENST00000474929 ATP1A1P05023 1023 aaKnown RBP7.77□□□□□ -1.17
USP54-211ENST00000474929 TFE3P19532 575 aaPredicted RBP7.77□□□□□ -1.17
USP54-211ENST00000474929 EPHB2P29323 1055 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms