RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 AGAP2Q99490 1192 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 ARL8BQ9NVJ2 186 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 CYP11A1P05108 521 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 KCNA5P22460 613 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 GTF2A2P52657 109 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 PSKH2Q96QS6 385 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 BLOC1S4Q9NUP1 217 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 LAMA4Q16363 1823 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 RAB36O95755 333 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 ANXA3P12429 323 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 AMPD1P23109 780 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 CTBP2P56545 445 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 CDH1P12830 882 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 RAPSNQ13702 412 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 FAM35AQ86V20 835 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 SMG8Q8ND04 991 aaKnown RBP14.12□□□□□ -0.15
COL7A1-201ENST00000328333 OR5K1Q8NHB7 308 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 ABCB9Q9NP78 766 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 PER2O15055 1255 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 HSPA12BQ96MM6 686 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 LHX5Q9H2C1 402 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 ERVK-5Q9HDB9 667 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 ABCD2Q9UBJ2 740 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 CYP17A1P05093 508 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 OR3A3P47888 321 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 OR3A2P47893 321 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 REP15Q6BDI9 236 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 PIGWQ7Z7B1 504 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 GALNT5Q7Z7M9 940 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.12□□□□□ -0.151e-6■■■■□ 21.8
COL7A1-201ENST00000328333 PIKFYVEQ9Y2I7 2098 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 PTPRJQ12913 1337 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 ZNF423Q2M1K9 1284 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 PARP15Q460N3 678 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 TPRG1LQ5T0D9 272 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 ZNF572Q7Z3I7 529 aaPredicted RBP14.12□□□□□ -0.15
COL7A1-201ENST00000328333 MFSD2AQ8NA29 543 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 SGCDQ92629 289 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 NKIRAS2Q9NYR9 191 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 FBXO5Q9UKT4 447 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 SPATA31D1Q6ZQQ2 1576 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 PENKP01210 267 aaPredicted RBP14.12□□□□□ -0.15
COL7A1-201ENST00000328333 CHKAP35790 457 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 TDGQ13569 410 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 LPCAT4Q643R3 524 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 DUS1LQ6P1R4 473 aaKnown RBP14.12□□□□□ -0.15
COL7A1-201ENST00000328333 BORAQ6PGQ7 559 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 GET4Q7L5D6 327 aaPredicted RBP14.12□□□□□ -0.15
COL7A1-201ENST00000328333 OR10H4Q8NGA5 316 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 ZNF563Q8TA94 476 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 EBF3Q9H4W6 596 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 TMEM184CQ9NVA4 438 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 NFAT5O94916 1531 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 TLX3O43711 291 aaPredicted RBP14.11□□□□□ -0.15
COL7A1-201ENST00000328333 ATP5C1P36542 298 aaKnown RBP14.11□□□□□ -0.15
COL7A1-201ENST00000328333 PLEKHA6Q9Y2H5 1048 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 DLGAP1O14490 977 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 ASGR1P07306 291 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 HEPACAMQ14CZ8 416 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 OXR1Q8N573 874 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 OR14K1Q8NGZ2 314 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 TWIST2Q8WVJ9 160 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 GEMIN6Q8WXD5 167 aaKnown RBP14.11□□□□□ -0.15
COL7A1-201ENST00000328333 TLCD1Q96CP7 247 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 USP17L7P0C7H9 530 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 SLC35G4P0C7Q5 338 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 DNAJA1P31689 397 aaKnown RBP14.11□□□□□ -0.15
COL7A1-201ENST00000328333 CHERPQ8IWX8 916 aaKnown RBP14.11□□□□□ -0.15
COL7A1-201ENST00000328333 TESCQ96BS2 214 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 IFT27Q9BW83 186 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 LYARQ9NX58 379 aaKnown RBP14.11□□□□□ -0.15
COL7A1-201ENST00000328333 POMPQ9Y244 141 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 MAGEB17A8MXT2 336 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 F8VP50 259 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 PORP16435 677 aaPredicted RBP14.11□□□□□ -0.15
COL7A1-201ENST00000328333 CD36P16671 472 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 GDI2P50395 445 aaKnown RBP14.11□□□□□ -0.15
COL7A1-201ENST00000328333 CDC42EP5Q6NZY7 148 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 SPPL2CQ8IUH8 684 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 NSMCE3Q96MG7 304 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 GPRC5CQ9NQ84 441 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 OR6C70A6NIJ9 312 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 GARNL3Q5VVW2 1013 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 CES3Q6UWW8 571 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 ZNF34Q8IZ26 560 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 ARL6IP5O75915 188 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 MOB2Q70IA6 237 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 LGI2Q8N0V4 545 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 SHC3Q92529 594 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 USP29Q9HBJ7 922 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 HCN1O60741 890 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 CYP3A4P08684 503 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 HOXC12P31275 282 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 SLC9B1Q4ZJI4 515 aa14.11□□□□□ -0.15
COL7A1-201ENST00000328333 PPIEQ9UNP9 301 aaKnown RBP14.11□□□□□ -0.15
COL7A1-201ENST00000328333 LTKP29376 864 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 GRIA2P42262 883 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 BACE1P56817 501 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 FSTL1Q12841 308 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 IDNKQ5T6J7 187 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms