RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 RAB44Q7Z6P3 723 aaPredicted RBP18.11■□□□□ 0.49
USP39-201ENST00000323701 MYO1HQ8N1T3 1032 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 LILRA3Q8N6C8 439 aaPredicted RBP18.11■□□□□ 0.49
USP39-201ENST00000323701 DCBLD1Q8N8Z6 715 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 CSGALNACT1Q8TDX6 532 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 NSL1Q96IY1 281 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 MARK4Q96L34 752 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 NECTIN4Q96NY8 510 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 MIPEPQ99797 713 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 RSPH9Q9H1X1 276 aaPredicted RBP18.11■□□□□ 0.49
USP39-201ENST00000323701 EML4Q9HC35 981 aaKnown RBP18.11■□□□□ 0.49
USP39-201ENST00000323701 MID1IP1Q9NPA3 183 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 DYRK4Q9NR20 520 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 KCTD5Q9NXV2 234 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 LIMD1Q9UGP4 676 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 SOX1O00570 391 aaPredicted RBP18.11■□□□□ 0.49
USP39-201ENST00000323701 E2F3O00716 465 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 DCXO43602 365 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 KRT16P08779 473 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 RGS4P49798 205 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 BOP1Q14137 746 aaKnown RBP18.11■□□□□ 0.49
USP39-201ENST00000323701 GBX1Q14549 363 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 PON2Q15165 354 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 CST6Q15828 149 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 AGBL4Q5VU57 503 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 DSG4Q86SJ6 1040 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 ADAMTSL2Q86TH1 951 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 NRSN1Q8IZ57 195 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 PLA2G15Q8NCC3 412 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 DCUN1D1Q96GG9 259 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 C3orf30Q96M34 536 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 TRMOQ9BU70 441 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 LRMDAQ9H2I8 198 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 VTI1BQ9UEU0 232 aa18.11■□□□□ 0.49
USP39-201ENST00000323701 C1QTNF3-AMACRE9PGA6 284 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 STX16-NPEPL1H3BU86 382 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 STX16O14662 325 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 TAPBPO15533 448 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 FFAR2O15552 330 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 MAGEC1O60732 1142 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 ADAM23O75077 832 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 MSH3P20585 1137 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 COPAP53621 1224 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 TMEM52BQ4KMG9 183 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 TMEM196Q5HYL7 178 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.1■□□□□ 0.49
USP39-201ENST00000323701 RINLQ6ZS11 566 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 CYP2U1Q7Z449 544 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 ZNF483Q8TF39 744 aaPredicted RBP18.1■□□□□ 0.49
USP39-201ENST00000323701 NUS1Q96E22 293 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 MAELQ96JY0 434 aaKnown RBP18.1■□□□□ 0.49
USP39-201ENST00000323701 VPS35Q96QK1 796 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 PANX3Q96QZ0 392 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 C1QTNF3Q9BXJ4 246 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 KCNK12Q9HB15 430 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 DNAJC15Q9Y5T4 150 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 COL4A2P08572 1712 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 TSPAN6O43657 245 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 SNX2O60749 519 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 TNFRSF4P43489 277 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 TMEM115Q12893 351 aaPredicted RBP18.1■□□□□ 0.49
USP39-201ENST00000323701 CCDC85BQ15834 202 aaPredicted RBP18.1■□□□□ 0.49
USP39-201ENST00000323701 ZXDCQ2QGD7 858 aaPredicted RBP18.1■□□□□ 0.49
USP39-201ENST00000323701 ANKS6Q68DC2 871 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 FRA10AC1Q70Z53 315 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 POU5F2Q8N7G0 328 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 AGAP11Q8TF27 550 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 GULP1Q9UBP9 304 aa18.1■□□□□ 0.49
USP39-201ENST00000323701 ATP6AP2A0A1C7CYW4 349 aa18.09■□□□□ 0.49
USP39-201ENST00000323701 SLCO1B7G3V0H7 640 aa18.09■□□□□ 0.49
USP39-201ENST00000323701 LZTS3O60299 673 aaPredicted RBP18.09■□□□□ 0.49
USP39-201ENST00000323701 ATP6AP2O75787 350 aa18.09■□□□□ 0.49
USP39-201ENST00000323701 ASGR2P07307 311 aa18.09■□□□□ 0.49
USP39-201ENST00000323701 NQO1P15559 274 aaKnown RBP18.09■□□□□ 0.49
USP39-201ENST00000323701 GDF5P43026 501 aa18.09■□□□□ 0.49
USP39-201ENST00000323701 SYVN1Q86TM6 617 aa18.09■□□□□ 0.49
USP39-201ENST00000323701 IL17RCQ8NAC3 791 aa18.09■□□□□ 0.49
USP39-201ENST00000323701 FOXJ1Q92949 421 aa18.09■□□□□ 0.49
USP39-201ENST00000323701 FAM126AQ9BYI3 521 aaPredicted RBP18.09■□□□□ 0.49
USP39-201ENST00000323701 TUBB1Q9H4B7 451 aa18.09■□□□□ 0.49
USP39-201ENST00000323701 RAD18Q9NS91 495 aa18.09■□□□□ 0.49
USP39-201ENST00000323701 NUDT4Q9NZJ9 180 aa18.09■□□□□ 0.49
USP39-201ENST00000323701 LNPEPQ9UIQ6 1025 aa18.09■□□□□ 0.49
USP39-201ENST00000323701 TRPM6Q9BX84 2022 aa18.09■□□□□ 0.49
USP39-201ENST00000323701 A0A1W2PP55 124 aa18.08■□□□□ 0.49
USP39-201ENST00000323701 AOC1P19801 751 aa18.08■□□□□ 0.49
USP39-201ENST00000323701 COL9A1P20849 921 aa18.08■□□□□ 0.49
USP39-201ENST00000323701 HK2P52789 917 aa18.08■□□□□ 0.49
USP39-201ENST00000323701 LCP2Q13094 533 aa18.08■□□□□ 0.49
USP39-201ENST00000323701 PREPLQ4J6C6 727 aaPredicted RBP18.08■□□□□ 0.49
USP39-201ENST00000323701 NXNQ6DKJ4 435 aa18.08■□□□□ 0.49
USP39-201ENST00000323701 SLC44A3Q8N4M1 653 aa18.08■□□□□ 0.49
USP39-201ENST00000323701 OR52B6Q8NGF0 335 aa18.08■□□□□ 0.49
USP39-201ENST00000323701 CDK15Q96Q40 435 aa18.08■□□□□ 0.49
USP39-201ENST00000323701 MEAF6Q9HAF1 191 aa18.08■□□□□ 0.49
USP39-201ENST00000323701 KLC4Q9NSK0 619 aa18.08■□□□□ 0.49
USP39-201ENST00000323701 COLQQ9Y215 455 aaPredicted RBP18.08■□□□□ 0.49
USP39-201ENST00000323701 OARD1Q9Y530 152 aa18.08■□□□□ 0.49
USP39-201ENST00000323701 PCYT1BQ9Y5K3 369 aaPredicted RBP18.08■□□□□ 0.49
USP39-201ENST00000323701 PIAS3Q9Y6X2 628 aa18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms