RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 R3HDM2Q9Y2K5 976 aaKnown RBP3.7□□□□□ -1.82
CD44-239ENST00000639002 PCNX3Q9H6A9 2034 aa3.7□□□□□ -1.82
CD44-239ENST00000639002 A0A1W2PPH5 198 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 NDUFAF8A1L188 74 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 J3QR06 171 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 MAP2K7O14733 419 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 HCRTR2O43614 444 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 IPO7O95373 1038 aaKnown RBP3.69□□□□□ -1.82
CD44-239ENST00000639002 CLPTM1O96005 669 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 TPOP07202 933 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 PLA2G4BP0C869 781 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 CBLP22681 906 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 SP100P23497 879 aaPredicted RBP3.69□□□□□ -1.82
CD44-239ENST00000639002 ITGA3P26006 1051 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 CASP6P55212 293 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 CCDC190Q86UF4 302 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 ZNF440Q8IYI8 595 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 HJURPQ8NCD3 748 aaPredicted RBP3.69□□□□□ -1.82
CD44-239ENST00000639002 OLIG1Q8TAK6 271 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 TRPC4APQ8TEL6 797 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 SMARCE1Q969G3 411 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 MOCOSQ96EN8 888 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 SLC47A1Q96FL8 570 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 PRAC1Q96KF2 57 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 RTP3Q9BQQ7 232 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 RHNO1Q9BSD3 238 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 TRIM15Q9C019 465 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 WDR13Q9H1Z4 485 aa3.69□□□□□ -1.82
CD44-239ENST00000639002 TRMT1Q9NXH9 659 aaKnown RBP3.69□□□□□ -1.82
CD44-239ENST00000639002 TDRD15B5MCY1 1934 aaKnown RBP3.68□□□□□ -1.82
CD44-239ENST00000639002 A0A0J9YWU9 116 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 FAM237BA0A1B0GVD1 139 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 H3BQ06 376 aaPredicted RBP3.68□□□□□ -1.82
CD44-239ENST00000639002 H7C423 109 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 SMAD9O15198 467 aaKnown RBP3.68□□□□□ -1.82
CD44-239ENST00000639002 EML2O95834 649 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 SPARCP09486 303 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 ATP1A3P13637 1013 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 DPEP1P16444 411 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 ANXA7P20073 488 aaKnown RBP3.68□□□□□ -1.82
CD44-239ENST00000639002 ZNF10P21506 573 aaPredicted RBP3.68□□□□□ -1.82
CD44-239ENST00000639002 WNT5AP41221 380 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 MVPQ14764 893 aaKnown RBP3.68□□□□□ -1.82
CD44-239ENST00000639002 TMEM95Q3KNT9 176 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 ASPRV1Q53RT3 343 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 STXBP4Q6ZWJ1 553 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 PLD3Q8IV08 490 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 CRYBG2Q8N1P7 616 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 SCML4Q8N228 414 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 SGCDQ92629 289 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 SEMA4DQ92854 862 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 ZKSCAN4Q969J2 545 aaPredicted RBP3.68□□□□□ -1.82
CD44-239ENST00000639002 GMPPAQ96IJ6 420 aaPredicted RBP3.68□□□□□ -1.82
CD44-239ENST00000639002 VGLL1Q99990 258 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 UBN1Q9NPG3 1134 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 ATAD3AQ9NVI7 634 aa3.68□□□□□ -1.82
CD44-239ENST00000639002 C15orf62A8K5M9 175 aa3.67□□□□□ -1.82
CD44-239ENST00000639002 TMEM189-UBE2V1I3L0A0 370 aa3.67□□□□□ -1.82
CD44-239ENST00000639002 PLK4O00444 970 aa3.67□□□□□ -1.82
CD44-239ENST00000639002 NOVP48745 357 aa3.67□□□□□ -1.82
CD44-239ENST00000639002 BMXP51813 675 aa3.67□□□□□ -1.82
CD44-239ENST00000639002 MRPS5P82675 430 aaKnown RBP3.67□□□□□ -1.82
CD44-239ENST00000639002 PPARDQ03181 441 aa3.67□□□□□ -1.82
CD44-239ENST00000639002 NIPAL4Q0D2K0 466 aa3.67□□□□□ -1.82
CD44-239ENST00000639002 MFAP5Q13361 173 aa3.67□□□□□ -1.82
CD44-239ENST00000639002 UBE2V1Q13404 147 aa3.67□□□□□ -1.82
CD44-239ENST00000639002 NAB2Q15742 525 aa3.67□□□□□ -1.82
CD44-239ENST00000639002 TMEM198Q66K66 360 aa3.67□□□□□ -1.82
CD44-239ENST00000639002 SUSD1Q6UWL2 747 aa3.67□□□□□ -1.82
CD44-239ENST00000639002 PPP4R1Q8TF05 950 aa3.67□□□□□ -1.82
CD44-239ENST00000639002 MYH15Q9Y2K3 1946 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 A0A1B0GVC2 190 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 TMEM8BA6NDV4 472 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 GPR137BO60478 399 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 CSPG5O95196 566 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 FAM157CP0CG43 387 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 BSGP35613 385 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 NKX2-1P43699 371 aaPredicted RBP3.66□□□□□ -1.82
CD44-239ENST00000639002 GALCP54803 685 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 PRKAA1Q13131 559 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 GLDNQ6ZMI3 551 aaPredicted RBP3.66□□□□□ -1.82
CD44-239ENST00000639002 TPRG1Q6ZUI0 275 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 DENND5BQ6ZUT9 1274 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 ARHGAP12Q8IWW6 846 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 DIS3L2Q8IYB7 885 aaKnown RBP3.66□□□□□ -1.82
CD44-239ENST00000639002 LYG1Q8N1E2 194 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 OR2T6Q8NHC8 308 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 GSDMBQ8TAX9 411 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 SYT11Q9BT88 431 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 CABLES2Q9BTV7 478 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 RPS10P5Q9NQ39 176 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 COQ3Q9NZJ6 369 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 KLHL8Q9P2G9 620 aaPredicted RBP3.66□□□□□ -1.82
CD44-239ENST00000639002 KCNE2Q9Y6J6 123 aa3.66□□□□□ -1.82
CD44-239ENST00000639002 SERINC4A6NH21 518 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 ZBTB43O43298 467 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 NDUFS3O75489 264 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 CKMT2P17540 419 aa3.65□□□□□ -1.83
CD44-239ENST00000639002 CEACAM8P31997 349 aaPredicted RBP3.65□□□□□ -1.83
CD44-239ENST00000639002 MSH2P43246 934 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms