RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 TRIM13O60858 407 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 MTHFD2P13995 350 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 NAGLUP54802 743 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 RPS21P63220 83 aaKnown RBP19.8■□□□□ 0.76
CLN3-250ENST00000636839 ZBTB16Q05516 673 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 CCDC15Q0P6D6 951 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 IRF4Q15306 451 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 TMEM220Q6QAJ8 160 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 HEATR4Q86WZ0 1026 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 PHYKPLQ8IUZ5 450 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 FRMD1Q8N878 549 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 KIAA1191Q96A73 305 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 HHIPQ96QV1 700 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 ATOH8Q96SQ7 321 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 SLC17A9Q9BYT1 436 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 ATXN10Q9UBB4 475 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 MUTYHQ9UIF7 546 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 PRKAB1Q9Y478 270 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 A8MT66 165 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 CFAP99D6REC4 459 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 KLF11O14901 512 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 SNNO75324 88 aaPredicted RBP19.8■□□□□ 0.76
CLN3-250ENST00000636839 CDK14O94921 469 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 AOAHP28039 575 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 HSPA14Q0VDF9 509 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 BOP1Q14137 746 aaKnown RBP19.8■□□□□ 0.76
CLN3-250ENST00000636839 FAM219BQ5XKK7 198 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 DOK6Q6PKX4 331 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 TP53I13Q8NBR0 393 aaPredicted RBP19.8■□□□□ 0.76
CLN3-250ENST00000636839 RDH11Q8TC12 318 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 TFB2MQ9H5Q4 396 aaKnown RBP19.8■□□□□ 0.76
CLN3-250ENST00000636839 ADAMTS6Q9UKP5 1117 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 FZD4Q9ULV1 537 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 NCKAP1Q9Y2A7 1128 aa19.8■□□□□ 0.76
CLN3-250ENST00000636839 LRRC14BA6NHZ5 514 aa19.79■□□□□ 0.76
CLN3-250ENST00000636839 NCF1BA6NI72 391 aaPredicted RBP19.79■□□□□ 0.76
CLN3-250ENST00000636839 NCF1CA8MVU1 366 aaPredicted RBP19.79■□□□□ 0.76
CLN3-250ENST00000636839 SERPINE1P05121 402 aa19.79■□□□□ 0.76
CLN3-250ENST00000636839 C7P10643 843 aa19.79■□□□□ 0.76
CLN3-250ENST00000636839 NCF1P14598 390 aaPredicted RBP19.79■□□□□ 0.76
CLN3-250ENST00000636839 HK3P52790 923 aa19.79■□□□□ 0.76
CLN3-250ENST00000636839 OCRLQ01968 901 aa19.79■□□□□ 0.76
CLN3-250ENST00000636839 SGCGQ13326 291 aa19.79■□□□□ 0.76
CLN3-250ENST00000636839 CYHR1Q6ZMK1 362 aa19.79■□□□□ 0.76
CLN3-250ENST00000636839 USP30Q70CQ3 517 aa19.79■□□□□ 0.76
CLN3-250ENST00000636839 SYT13Q7L8C5 426 aa19.79■□□□□ 0.76
CLN3-250ENST00000636839 PIGWQ7Z7B1 504 aa19.79■□□□□ 0.76
CLN3-250ENST00000636839 HIC2Q96JB3 615 aa19.79■□□□□ 0.76
CLN3-250ENST00000636839 UTP6Q9NYH9 597 aaKnown RBP19.79■□□□□ 0.76
CLN3-250ENST00000636839 SCML1Q9UN30 329 aa19.79■□□□□ 0.76
CLN3-250ENST00000636839 CA5BQ9Y2D0 317 aa19.79■□□□□ 0.76
CLN3-250ENST00000636839 ZNF8P17098 575 aaPredicted RBP19.78■□□□□ 0.76
CLN3-250ENST00000636839 ATP5F1P24539 256 aaPredicted RBP19.78■□□□□ 0.76
CLN3-250ENST00000636839 PBLDP30039 288 aaPredicted RBP19.78■□□□□ 0.76
CLN3-250ENST00000636839 SLC1A6P48664 564 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 PXNP49023 591 aaPredicted RBP19.78■□□□□ 0.76
CLN3-250ENST00000636839 KPNA2P52292 529 aaKnown RBP19.78■□□□□ 0.76
CLN3-250ENST00000636839 LIPMQ5VYY2 423 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 ATG16L1Q676U5 607 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 NLRP8Q86W28 1048 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 HORMAD1Q86X24 394 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 CCNYL1Q8N7R7 359 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 DLG3Q92796 817 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 TMEM237Q96Q45 408 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 PANX3Q96QZ0 392 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 SORT1Q99523 831 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 SHCBP1LQ9BZQ2 653 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 GULP1Q9UBP9 304 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 MARCOQ9UEW3 520 aaPredicted RBP19.78■□□□□ 0.76
CLN3-250ENST00000636839 RNF112Q9ULX5 631 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 USP34Q70CQ2 3546 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 STK25O00506 426 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 CHRNGP07510 517 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 KITP10721 976 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 DGKEP52429 567 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 ATP6V0D1P61421 351 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 CDK3Q00526 305 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 KBTBD6Q86V97 674 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 ZNF547Q8IVP9 402 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 TRIM42Q8IWZ5 723 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 ELMO1Q92556 727 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 COX14Q96I36 57 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 TBC1D17Q9HA65 648 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 TRIM39Q9HCM9 518 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 ITM2CQ9NQX7 267 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 LATS2Q9NRM7 1088 aa19.78■□□□□ 0.76
CLN3-250ENST00000636839 CHURC1-FNTBB4DL54 471 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 SNX3O60493 162 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 LILRB5O75023 590 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 SIX3O95343 332 aaPredicted RBP19.77■□□□□ 0.76
CLN3-250ENST00000636839 PFKFB4Q16877 469 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 KIAA1161Q6NSJ0 714 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 CRTC3Q6UUV7 619 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 ADAMTSL4Q6UY14 1074 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 RHEBL1Q8TAI7 183 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 STAG3L4Q8TBR4 150 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 RLN3Q8WXF3 142 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 SEC16BQ96JE7 1060 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 NPHS2Q9NP85 383 aa19.77■□□□□ 0.76
CLN3-250ENST00000636839 POLMQ9NP87 494 aaPredicted RBP19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms