RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 TNPO3Q9Y5L0 923 aaKnown RBP12.61□□□□□ -0.39
LINC00540-203ENST00000631321 GBF1Q92538 1859 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 ZNF840PA6NDX5 716 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 ANKRD28O15084 1053 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 GJB5O95377 273 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 CD160O95971 181 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 KLKB1P03952 638 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 VARSP26640 1264 aaKnown RBP12.6□□□□□ -0.39
LINC00540-203ENST00000631321 RPL10P27635 214 aaKnown RBP12.6□□□□□ -0.39
LINC00540-203ENST00000631321 CENPFP49454 3210 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 OR4D2P58180 307 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 ADARB1P78563 741 aaKnown RBP12.6□□□□□ -0.39
LINC00540-203ENST00000631321 SREBF2Q12772 1141 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 DCTN2Q13561 401 aaKnown RBP12.6□□□□□ -0.39
LINC00540-203ENST00000631321 CRY1Q16526 586 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 CXorf57Q6NSI4 855 aaKnown RBP12.6□□□□□ -0.39
LINC00540-203ENST00000631321 RNF180Q86T96 592 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 ESAMQ96AP7 390 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 ACTL8Q9H568 366 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 MAGEL2Q9UJ55 1249 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 TMEM88BA6NKF7 163 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 E5RI56 91 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 CBX4O00257 560 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 LSM1O15116 133 aaKnown RBP12.6□□□□□ -0.39
LINC00540-203ENST00000631321 PRSS23O95084 383 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 CDH1P12830 882 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 ARF5P84085 180 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 CACNG1Q06432 222 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 HECTD3Q5T447 861 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 SLC2A7Q6PXP3 512 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 ADAMTSL2Q86TH1 951 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 ABI1Q8IZP0 508 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 EFHBQ8N7U6 833 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 CYGBQ8WWM9 190 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 GFM2Q969S9 779 aaKnown RBP12.6□□□□□ -0.39
LINC00540-203ENST00000631321 FBXL20Q96IG2 436 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 CHID1Q9BWS9 393 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 BPIFA1Q9NP55 256 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 IL17CQ9P0M4 197 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 CDH7Q9ULB5 785 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 USP22Q9UPT9 525 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 PCDHB1Q9Y5F3 818 aa12.6□□□□□ -0.39
LINC00540-203ENST00000631321 H0YAE9 185 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 OR7A17O14581 309 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 COCHO43405 550 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 FZD6O60353 706 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 TULP3O75386 442 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 STC2O76061 302 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 CAPN1P07384 714 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 JAK1P23458 1154 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 TTKP33981 857 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 HTR6P50406 440 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 CYP20A1Q6UW02 462 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 SBSNQ6UWP8 590 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 ZNF783Q6ZMS7 281 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 RNF165Q6ZSG1 346 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 GOLGA7Q7Z5G4 137 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 GPR180Q86V85 440 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 SLC43A3Q8NBI5 491 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 ISOC1Q96CN7 298 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 RPL10LQ96L21 214 aaKnown RBP12.59□□□□□ -0.39
LINC00540-203ENST00000631321 NSMCE2Q96MF7 247 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 DOK1Q99704 481 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 TTPALQ9BTX7 342 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 BDH2Q9BUT1 245 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 NPLQ9BXD5 320 aaPredicted RBP12.59□□□□□ -0.39
LINC00540-203ENST00000631321 NEUROG3Q9Y4Z2 214 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 PRMT5O14744 637 aaPredicted RBP12.59□□□□□ -0.39
LINC00540-203ENST00000631321 CORO1AP31146 461 aaKnown RBP12.59□□□□□ -0.39
LINC00540-203ENST00000631321 NUP107P57740 925 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 CTBSQ01459 385 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 ADGRF1Q5T601 910 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 RNF219Q5W0B1 726 aaPredicted RBP12.59□□□□□ -0.39
LINC00540-203ENST00000631321 GLYATQ6IB77 296 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 CERS6Q6ZMG9 384 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 GALNT13Q8IUC8 556 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 LRRC43Q8N309 656 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 PDPRQ8NCN5 879 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 METTL6Q8TCB7 284 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 CCDC115Q96NT0 180 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 CDK15Q96Q40 435 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 CGREF1Q99674 301 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 NACA2Q9H009 215 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 LIN28AQ9H9Z2 209 aaKnown RBP12.59□□□□□ -0.39
LINC00540-203ENST00000631321 NTN4Q9HB63 628 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 LHX3Q9UBR4 397 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 ZNF711Q9Y462 761 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 CCL27Q9Y4X3 112 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 PCDHB7Q9Y5E2 793 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 THSD7BQ9C0I4 1608 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 CEP350Q5VT06 3117 aa12.59□□□□□ -0.39
LINC00540-203ENST00000631321 GOLGA8CPA6NN73 597 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 UPK1AO00322 258 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 G6PDP11413 515 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 RPS3P23396 243 aaKnown RBP eCLIP12.58□□□□□ -0.4
LINC00540-203ENST00000631321 CASP2P42575 452 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 TM4SF4P48230 202 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 GATMP50440 423 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 PWP1Q13610 501 aa12.58□□□□□ -0.4
LINC00540-203ENST00000631321 GTF2H2Q13888 395 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms