RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 PRR19A6NJB7 356 aa19.41■□□□□ 0.7
UPF3A-211ENST00000618700 QSOX1O00391 747 aa19.41■□□□□ 0.7
UPF3A-211ENST00000618700 PCDHGA12O60330 932 aa19.41■□□□□ 0.7
UPF3A-211ENST00000618700 SDC3O75056 442 aa19.41■□□□□ 0.7
UPF3A-211ENST00000618700 TUBBP07437 444 aa19.41■□□□□ 0.7
UPF3A-211ENST00000618700 CELA2BP08218 269 aaPredicted RBP19.41■□□□□ 0.7
UPF3A-211ENST00000618700 LEPRP48357 1165 aaKnown RBP19.41■□□□□ 0.7
UPF3A-211ENST00000618700 PMS2P54278 862 aa19.41■□□□□ 0.7
UPF3A-211ENST00000618700 BNIP3Q12983 259 aa19.41■□□□□ 0.7
UPF3A-211ENST00000618700 AASDHQ4L235 1098 aaPredicted RBP19.41■□□□□ 0.7
UPF3A-211ENST00000618700 PRRT3Q5FWE3 981 aa19.41■□□□□ 0.7
UPF3A-211ENST00000618700 TRMT10CQ7L0Y3 403 aaKnown RBP19.41■□□□□ 0.7
UPF3A-211ENST00000618700 SLC26A11Q86WA9 606 aa19.41■□□□□ 0.7
UPF3A-211ENST00000618700 NRROSQ86YC3 692 aa19.41■□□□□ 0.7
UPF3A-211ENST00000618700 FSTL5Q8N475 847 aaPredicted RBP19.41■□□□□ 0.7
UPF3A-211ENST00000618700 FBF1Q8TES7 1133 aa19.41■□□□□ 0.7
UPF3A-211ENST00000618700 AENQ8WTP8 325 aaKnown RBP19.41■□□□□ 0.7
UPF3A-211ENST00000618700 BIRC8Q96P09 236 aa19.41■□□□□ 0.7
UPF3A-211ENST00000618700 UCKL1Q9NWZ5 548 aa19.41■□□□□ 0.7
UPF3A-211ENST00000618700 SLC23A2Q9UGH3 650 aa19.41■□□□□ 0.7
UPF3A-211ENST00000618700 CXorf49A8MYA2 514 aaPredicted RBP19.4■□□□□ 0.7
UPF3A-211ENST00000618700 AQP9O43315 295 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 ACSL3O95573 720 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 ACP5P13686 325 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 GABRB3P28472 473 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 PHBP35232 272 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 CTBSQ01459 385 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 PLA2G4EQ3MJ16 856 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 ZNF658BQ4V348 819 aaPredicted RBP19.4■□□□□ 0.7
UPF3A-211ENST00000618700 CHST15Q7LFX5 561 aaPredicted RBP19.4■□□□□ 0.7
UPF3A-211ENST00000618700 SDR16C5Q8N3Y7 309 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 CCL4L1Q8NHW4 92 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 LMX1AQ8TE12 382 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 CDKL2Q92772 493 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 EPB41L4BQ9H329 900 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 TMEM9BQ9NQ34 198 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 GULP1Q9UBP9 304 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 GNPTGQ9UJJ9 305 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 PLEKHM1Q9Y4G2 1056 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 PCDHB1Q9Y5F3 818 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 PCDHGB2Q9Y5G2 931 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 PSAT1Q9Y617 370 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 DNMT3AQ9Y6K1 912 aaPredicted RBP19.4■□□□□ 0.7
UPF3A-211ENST00000618700 CSNK1G3Q9Y6M4 447 aa19.4■□□□□ 0.7
UPF3A-211ENST00000618700 UBA6A0AVT1 1052 aaPredicted RBP19.39■□□□□ 0.69
UPF3A-211ENST00000618700 RIPK2O43353 540 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 GDF9O60383 454 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 POP7O75817 140 aaKnown RBP19.39■□□□□ 0.69
UPF3A-211ENST00000618700 PIAS1O75925 651 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 HAUS5O94927 633 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 ESR1P03372 595 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 ABHD2P08910 425 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 OR56A5P0C7T3 313 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 GIMD1P0DJR0 217 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 CTSEP14091 401 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 CLCNKAP51800 687 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 EIF3BP55884 814 aaKnown RBP19.39■□□□□ 0.69
UPF3A-211ENST00000618700 DMPKQ09013 629 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 ILF3Q12906 894 aaKnown RBP eCLIP19.39■□□□□ 0.69
UPF3A-211ENST00000618700 NAB1Q13506 487 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 C1orf61Q13536 156 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 ELOCQ15369 112 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 KBTBD12Q3ZCT8 623 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 CTSL3PQ5NE16 218 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 ZNF549Q6P9A3 640 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 EMBQ6PCB8 327 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 CNSTQ6PJW8 725 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 XKR5Q6UX68 686 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 SLC25A45Q8N413 288 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 BEND7Q8N7W2 519 aaPredicted RBP19.39■□□□□ 0.69
UPF3A-211ENST00000618700 MCMBPQ9BTE3 642 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 ACSS3Q9H6R3 686 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 NSMCE4AQ9NXX6 385 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 RABGEF1Q9UJ41 708 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 CRYL1Q9Y2S2 319 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 TDRD6O60522 2096 aaKnown RBP19.39■□□□□ 0.69
UPF3A-211ENST00000618700 PIKFYVEQ9Y2I7 2098 aa19.39■□□□□ 0.69
UPF3A-211ENST00000618700 KLHL33A6NCF5 533 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 LMO7DNF2Z398 122 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 H3BMM5 538 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 AHSGP02765 367 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 FTH1P02794 183 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 GSTM1P09488 218 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 AK4P27144 223 aaPredicted RBP19.38■□□□□ 0.69
UPF3A-211ENST00000618700 GSTM4Q03013 218 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 SLC14A1Q13336 389 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 EFTUD2Q15029 972 aaKnown RBP eCLIP19.38■□□□□ 0.693e-6■■□□□ 13.4
UPF3A-211ENST00000618700 TCEA2Q15560 299 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 INSCQ1MX18 579 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 PTRHD1Q6GMV3 140 aaKnown RBP19.38■□□□□ 0.69
UPF3A-211ENST00000618700 DBX2Q6ZNG2 339 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 GATAD2AQ86YP4 633 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 OR2L2Q8NH16 312 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 LKAAEAR1Q8TD35 194 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 CAVIN3Q969G5 261 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 GSDMCQ9BYG8 508 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 KCNK6Q9Y257 313 aa19.38■□□□□ 0.69
UPF3A-211ENST00000618700 MGAT4DA6NG13 374 aa19.37■□□□□ 0.69
UPF3A-211ENST00000618700 F8W8V4 182 aa19.37■□□□□ 0.69
UPF3A-211ENST00000618700 CTIFO43310 598 aaKnown RBP19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms