RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ZNF33AQ06730 810 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 MSANTD2Q6P1R3 559 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 ZDHHC13Q8IUH4 622 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 CDC26Q8NHZ8 85 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 UNCXA6NJT0 531 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 A6NL46 340 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 BNIP3LO60238 219 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 RHOQP17081 205 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 TAF10Q12962 218 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 MANEALQ5VSG8 457 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 PSAPL1Q6NUJ1 521 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 GCNT7Q6ZNI0 430 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 R3HCC1LQ7Z5L2 792 aaKnown RBP15.09■□□□□ 0.01
UPF1-204ENST00000596842 PIANPQ8IYJ0 282 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 SLC15A4Q8N697 577 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 ATP6V0D2Q8N8Y2 350 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 OR6K2Q8NGY2 324 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 OSCP1Q8WVF1 389 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 NRBF2Q96F24 287 aa15.09■□□□□ 0.01
UPF1-204ENST00000596842 DEAF1O75398 565 aaPredicted RBP15.08■□□□□ 0.01
UPF1-204ENST00000596842 CST1P01037 141 aa15.08■□□□□ 0.01
UPF1-204ENST00000596842 RGRP47804 291 aa15.08■□□□□ 0.01
UPF1-204ENST00000596842 ADAM17P78536 824 aa15.08■□□□□ 0.01
UPF1-204ENST00000596842 HMGCS1Q01581 520 aa15.08■□□□□ 0.01
UPF1-204ENST00000596842 SEMG2Q02383 582 aa15.08■□□□□ 0.01
UPF1-204ENST00000596842 C6orf136Q5SQH8 315 aa15.08■□□□□ 0.01
UPF1-204ENST00000596842 ENPP6Q6UWR7 440 aa15.08■□□□□ 0.01
UPF1-204ENST00000596842 HACD2Q6Y1H2 254 aa15.08■□□□□ 0.01
UPF1-204ENST00000596842 PHACTR4Q8IZ21 702 aa15.08■□□□□ 0.01
UPF1-204ENST00000596842 DTWD1Q8N5C7 304 aa15.08■□□□□ 0.01
UPF1-204ENST00000596842 MFSD2AQ8NA29 543 aa15.08■□□□□ 0.01
UPF1-204ENST00000596842 SKA2Q8WVK7 121 aaPredicted RBP15.08■□□□□ 0.01
UPF1-204ENST00000596842 AURKBQ96GD4 344 aaPredicted RBP15.08■□□□□ 0.01
UPF1-204ENST00000596842 KATNAL1Q9BW62 490 aa15.08■□□□□ 0.01
UPF1-204ENST00000596842 CINPQ9BW66 212 aaPredicted RBP15.08■□□□□ 0.01
UPF1-204ENST00000596842 CORINQ9Y5Q5 1042 aa15.08■□□□□ 0.01
UPF1-204ENST00000596842 VPS26AO75436 327 aa15.08■□□□□ 0
UPF1-204ENST00000596842 ESRRBO95718 433 aa15.08■□□□□ 0
UPF1-204ENST00000596842 PBX3P40426 434 aa15.08■□□□□ 0
UPF1-204ENST00000596842 RPS24P62847 133 aaKnown RBP15.08■□□□□ 0
UPF1-204ENST00000596842 MAPRE1Q15691 268 aaKnown RBP15.08■□□□□ 0
UPF1-204ENST00000596842 TAF2Q6P1X5 1199 aa15.08■□□□□ 0
UPF1-204ENST00000596842 PHYKPLQ8IUZ5 450 aa15.08■□□□□ 0
UPF1-204ENST00000596842 CROCCP3Q8IVE0 287 aa15.08■□□□□ 0
UPF1-204ENST00000596842 FUBP1Q96AE4 644 aaKnown RBP15.08■□□□□ 0
UPF1-204ENST00000596842 BIRC8Q96P09 236 aa15.08■□□□□ 0
UPF1-204ENST00000596842 PARK7Q99497 189 aaKnown RBP15.08■□□□□ 0
UPF1-204ENST00000596842 PTPN18Q99952 460 aa15.08■□□□□ 0
UPF1-204ENST00000596842 CCSER2Q9H7U1 834 aa15.08■□□□□ 0
UPF1-204ENST00000596842 TRIM39Q9HCM9 518 aa15.08■□□□□ 0
UPF1-204ENST00000596842 ABCD2Q9UBJ2 740 aa15.08■□□□□ 0
UPF1-204ENST00000596842 GMEB1Q9Y692 573 aa15.08■□□□□ 0
UPF1-204ENST00000596842 A0A0G2JMZ2 1700 aa15.08■□□□□ 0
UPF1-204ENST00000596842 LRRC37A2A6NM11 1700 aa15.08■□□□□ 0
UPF1-204ENST00000596842 MROH6A6NGR9 719 aa15.08■□□□□ 0
UPF1-204ENST00000596842 TAF4O00268 1085 aa15.08■□□□□ 0
UPF1-204ENST00000596842 DFNA5O60443 496 aa15.08■□□□□ 0
UPF1-204ENST00000596842 CAPNS1P04632 268 aa15.08■□□□□ 0
UPF1-204ENST00000596842 AGXTP21549 392 aa15.08■□□□□ 0
UPF1-204ENST00000596842 MC4RP32245 332 aa15.08■□□□□ 0
UPF1-204ENST00000596842 RPL9P32969 192 aaKnown RBP15.08■□□□□ 0
UPF1-204ENST00000596842 ARSFP54793 590 aa15.08■□□□□ 0
UPF1-204ENST00000596842 PURAQ00577 322 aaKnown RBP15.08■□□□□ 0
UPF1-204ENST00000596842 TIAL1Q01085 375 aaKnown RBP eCLIP15.08■□□□□ 0
UPF1-204ENST00000596842 AP5B1Q2VPB7 878 aa15.08■□□□□ 0
UPF1-204ENST00000596842 ZNF598Q86UK7 904 aaKnown RBP15.08■□□□□ 0
UPF1-204ENST00000596842 ANKRD46Q86W74 232 aa15.08■□□□□ 0
UPF1-204ENST00000596842 SFRP1Q8N474 314 aa15.08■□□□□ 0
UPF1-204ENST00000596842 OR56A4Q8NGH8 313 aa15.08■□□□□ 0
UPF1-204ENST00000596842 TBC1D15Q8TC07 691 aa15.08■□□□□ 0
UPF1-204ENST00000596842 BRSK1Q8TDC3 778 aa15.08■□□□□ 0
UPF1-204ENST00000596842 MS4A4AQ96JQ5 239 aa15.08■□□□□ 0
UPF1-204ENST00000596842 TRIM54Q9BYV2 358 aa15.08■□□□□ 0
UPF1-204ENST00000596842 TOR3AQ9H497 397 aa15.08■□□□□ 0
UPF1-204ENST00000596842 MARCH7Q9H992 704 aa15.08■□□□□ 0
UPF1-204ENST00000596842 AASDHPPTQ9NRN7 309 aa15.08■□□□□ 0
UPF1-204ENST00000596842 ATAD3AQ9NVI7 634 aa15.08■□□□□ 0
UPF1-204ENST00000596842 RIC8BQ9NVN3 520 aa15.08■□□□□ 0
UPF1-204ENST00000596842 FAM8A1Q9UBU6 413 aa15.08■□□□□ 0
UPF1-204ENST00000596842 GIT1Q9Y2X7 761 aa15.08■□□□□ 0
UPF1-204ENST00000596842 ST14Q9Y5Y6 855 aa15.08■□□□□ 0
UPF1-204ENST00000596842 SYCE1LA8MT33 242 aa15.07■□□□□ 0
UPF1-204ENST00000596842 STX7O15400 261 aaKnown RBP15.07■□□□□ 0
UPF1-204ENST00000596842 KERAO60938 352 aa15.07■□□□□ 0
UPF1-204ENST00000596842 IGLV3-25P01717 112 aa15.07■□□□□ 0
UPF1-204ENST00000596842 THRBP10828 461 aa15.07■□□□□ 0
UPF1-204ENST00000596842 HRH2P25021 359 aa15.07■□□□□ 0
UPF1-204ENST00000596842 RAD23AP54725 363 aa15.07■□□□□ 0
UPF1-204ENST00000596842 GALNT1Q10472 559 aaPredicted RBP15.07■□□□□ 0
UPF1-204ENST00000596842 GTF2H3Q13889 308 aa15.07■□□□□ 0
UPF1-204ENST00000596842 FAM98BQ52LJ0 330 aaKnown RBP15.07■□□□□ 0
UPF1-204ENST00000596842 CCNYL2Q5T2Q4 361 aa15.07■□□□□ 0
UPF1-204ENST00000596842 ZNF467Q7Z7K2 595 aaPredicted RBP15.07■□□□□ 0
UPF1-204ENST00000596842 MON1AQ86VX9 555 aa15.07■□□□□ 0
UPF1-204ENST00000596842 CENPSQ8N2Z9 138 aa15.07■□□□□ 0
UPF1-204ENST00000596842 BORCS5Q969J3 196 aa15.07■□□□□ 0
UPF1-204ENST00000596842 TSPAN18Q96SJ8 248 aa15.07■□□□□ 0
UPF1-204ENST00000596842 LHPPQ9H008 270 aa15.07■□□□□ 0
UPF1-204ENST00000596842 TUBA8Q9NY65 449 aaPredicted RBP15.07■□□□□ 0
UPF1-204ENST00000596842 ZNF225Q9UK10 706 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms