RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 SLC9B2Q86UD5 537 aa25.32■■□□□ 1.64
TRIM28-204ENST00000594806 CCNJLQ8IV13 435 aa25.32■■□□□ 1.64
TRIM28-204ENST00000594806 BEND7Q8N7W2 519 aaPredicted RBP25.32■■□□□ 1.64
TRIM28-204ENST00000594806 CCDC74AQ96AQ1 378 aa25.32■■□□□ 1.64
TRIM28-204ENST00000594806 SH3KBP1Q96B97 665 aa25.32■■□□□ 1.64
TRIM28-204ENST00000594806 STAMBPL1Q96FJ0 436 aa25.32■■□□□ 1.64
TRIM28-204ENST00000594806 CCDC3Q9BQI4 270 aa25.32■■□□□ 1.64
TRIM28-204ENST00000594806 RAB17Q9H0T7 212 aa25.32■■□□□ 1.64
TRIM28-204ENST00000594806 SARS2Q9NP81 518 aaKnown RBP25.32■■□□□ 1.64
TRIM28-204ENST00000594806 WHRNQ9P202 907 aa25.32■■□□□ 1.64
TRIM28-204ENST00000594806 UTP11Q9Y3A2 253 aaKnown RBP25.32■■□□□ 1.64
TRIM28-204ENST00000594806 NEUROG3Q9Y4Z2 214 aa25.32■■□□□ 1.64
TRIM28-204ENST00000594806 MRFAP1Q9Y605 127 aa25.32■■□□□ 1.64
TRIM28-204ENST00000594806 MAD1L1Q9Y6D9 718 aa25.32■■□□□ 1.64
TRIM28-204ENST00000594806 RPS6KL1Q9Y6S9 549 aa25.32■■□□□ 1.64
TRIM28-204ENST00000594806 RNF215Q9Y6U7 377 aa25.32■■□□□ 1.64
TRIM28-204ENST00000594806 TCEA3O75764 348 aa25.31■■□□□ 1.64
TRIM28-204ENST00000594806 TTC4O95801 387 aa25.31■■□□□ 1.64
TRIM28-204ENST00000594806 MAZP56270 477 aaKnown RBP25.31■■□□□ 1.64
TRIM28-204ENST00000594806 INSM1Q01101 510 aaPredicted RBP25.31■■□□□ 1.64
TRIM28-204ENST00000594806 CALCOCO2Q13137 446 aa25.31■■□□□ 1.64
TRIM28-204ENST00000594806 METRNLQ641Q3 311 aa25.31■■□□□ 1.64
TRIM28-204ENST00000594806 SDCCAG8Q86SQ7 713 aaPredicted RBP25.31■■□□□ 1.64
TRIM28-204ENST00000594806 GPR150Q8NGU9 434 aa25.31■■□□□ 1.64
TRIM28-204ENST00000594806 SLC37A2Q8TED4 501 aa25.31■■□□□ 1.64
TRIM28-204ENST00000594806 LRRC39Q96DD0 335 aa25.31■■□□□ 1.64
TRIM28-204ENST00000594806 TCF12Q99081 682 aa25.31■■□□□ 1.64
TRIM28-204ENST00000594806 CCM2Q9BSQ5 444 aa25.31■■□□□ 1.64
TRIM28-204ENST00000594806 TRIM31Q9BZY9 425 aa25.31■■□□□ 1.64
TRIM28-204ENST00000594806 PRDM8Q9NQV8 689 aa25.31■■□□□ 1.64
TRIM28-204ENST00000594806 ANGPTL2Q9UKU9 493 aa25.31■■□□□ 1.64
TRIM28-204ENST00000594806 UNC13CQ8NB66 2214 aa25.31■■□□□ 1.64
TRIM28-204ENST00000594806 PDZK1P1A8MUH7 402 aa25.3■■□□□ 1.64
TRIM28-204ENST00000594806 HYAL3O43820 417 aaPredicted RBP25.3■■□□□ 1.64
TRIM28-204ENST00000594806 POLBP06746 335 aa25.3■■□□□ 1.64
TRIM28-204ENST00000594806 OR56A5P0C7T3 313 aa25.3■■□□□ 1.64
TRIM28-204ENST00000594806 XRCC1P18887 633 aaPredicted RBP25.3■■□□□ 1.64
TRIM28-204ENST00000594806 ARNTP27540 789 aa25.3■■□□□ 1.64
TRIM28-204ENST00000594806 HALP42357 657 aa25.3■■□□□ 1.64
TRIM28-204ENST00000594806 RPL21P46778 160 aaKnown RBP25.3■■□□□ 1.64
TRIM28-204ENST00000594806 ARCN1P48444 511 aaKnown RBP25.3■■□□□ 1.64
TRIM28-204ENST00000594806 ARL4CP56559 192 aa25.3■■□□□ 1.64
TRIM28-204ENST00000594806 CES3Q6UWW8 571 aa25.3■■□□□ 1.64
TRIM28-204ENST00000594806 SFTPA2Q8IWL1 248 aa25.3■■□□□ 1.64
TRIM28-204ENST00000594806 LMNTD2Q8IXW0 634 aa25.3■■□□□ 1.64
TRIM28-204ENST00000594806 HM13Q8TCT9 377 aa25.3■■□□□ 1.64
TRIM28-204ENST00000594806 PATE1Q8WXA2 126 aa25.3■■□□□ 1.64
TRIM28-204ENST00000594806 ZNF669Q96BR6 464 aaPredicted RBP25.3■■□□□ 1.64
TRIM28-204ENST00000594806 SNX24Q9Y343 169 aa25.3■■□□□ 1.64
TRIM28-204ENST00000594806 EML2O95834 649 aa25.29■■□□□ 1.64
TRIM28-204ENST00000594806 FTH1P02794 183 aa25.29■■□□□ 1.64
TRIM28-204ENST00000594806 PGAM1P18669 254 aa25.29■■□□□ 1.64
TRIM28-204ENST00000594806 OGNP20774 298 aaKnown RBP25.29■■□□□ 1.64
TRIM28-204ENST00000594806 DHX9Q08211 1270 aaKnown RBP25.29■■□□□ 1.64
TRIM28-204ENST00000594806 CBLBQ13191 982 aa25.29■■□□□ 1.64
TRIM28-204ENST00000594806 HIF1AQ16665 826 aa25.29■■□□□ 1.64
TRIM28-204ENST00000594806 CLPPQ16740 277 aaPredicted RBP25.29■■□□□ 1.64
TRIM28-204ENST00000594806 CHCHD2P9Q5T1J5 151 aaPredicted RBP25.29■■□□□ 1.64
TRIM28-204ENST00000594806 RNF187Q5TA31 235 aaPredicted RBP25.29■■□□□ 1.64
TRIM28-204ENST00000594806 HES3Q5TGS1 186 aa25.29■■□□□ 1.64
TRIM28-204ENST00000594806 CDCP2Q5VXM1 449 aa25.29■■□□□ 1.64
TRIM28-204ENST00000594806 DUPD1Q68J44 220 aa25.29■■□□□ 1.64
TRIM28-204ENST00000594806 LRRC6Q86X45 466 aa25.29■■□□□ 1.64
TRIM28-204ENST00000594806 GRAMD1AQ96CP6 724 aa25.29■■□□□ 1.64
TRIM28-204ENST00000594806 EBNA1BP2Q99848 306 aaKnown RBP25.29■■□□□ 1.64
TRIM28-204ENST00000594806 SCNM1Q9BWG6 230 aa25.29■■□□□ 1.64
TRIM28-204ENST00000594806 LDHAL6BQ9BYZ2 381 aaPredicted RBP25.29■■□□□ 1.64
TRIM28-204ENST00000594806 VPS9D1Q9Y2B5 631 aa25.29■■□□□ 1.64
TRIM28-204ENST00000594806 FAM169AQ9Y6X4 670 aa25.29■■□□□ 1.64
TRIM28-204ENST00000594806 ZCWPW2A0A1B0GU75 182 aa25.28■■□□□ 1.64
TRIM28-204ENST00000594806 JUPP14923 745 aa25.28■■□□□ 1.64
TRIM28-204ENST00000594806 HHEXQ03014 270 aa25.28■■□□□ 1.64
TRIM28-204ENST00000594806 NFE2L1Q14494 772 aa25.28■■□□□ 1.64
TRIM28-204ENST00000594806 ZNF449Q6P9G9 518 aa25.28■■□□□ 1.64
TRIM28-204ENST00000594806 RBM12BQ8IXT5 1001 aaKnown RBP25.28■■□□□ 1.64
TRIM28-204ENST00000594806 AGGF1Q8N302 714 aaeCLIP25.28■■□□□ 1.64
TRIM28-204ENST00000594806 CLDN19Q8N6F1 224 aa25.28■■□□□ 1.64
TRIM28-204ENST00000594806 GABPB2Q8TAK5 448 aaPredicted RBP25.28■■□□□ 1.64
TRIM28-204ENST00000594806 CALML6Q8TD86 181 aa25.28■■□□□ 1.64
TRIM28-204ENST00000594806 CCDC97Q96F63 343 aaPredicted RBP25.28■■□□□ 1.64
TRIM28-204ENST00000594806 FCRL3Q96P31 734 aaPredicted RBP25.28■■□□□ 1.64
TRIM28-204ENST00000594806 TSSK1BQ9BXA7 367 aa25.28■■□□□ 1.64
TRIM28-204ENST00000594806 LRRN3Q9H3W5 708 aa25.28■■□□□ 1.64
TRIM28-204ENST00000594806 UCK1Q9HA47 277 aa25.28■■□□□ 1.64
TRIM28-204ENST00000594806 CPNE7Q9UBL6 633 aa25.28■■□□□ 1.64
TRIM28-204ENST00000594806 CLCA2Q9UQC9 943 aa25.28■■□□□ 1.64
TRIM28-204ENST00000594806 MSRB2Q9Y3D2 182 aa25.28■■□□□ 1.64
TRIM28-204ENST00000594806 NCOR2Q9Y618 2525 aa25.27■■□□□ 1.64
TRIM28-204ENST00000594806 NTN3O00634 580 aaPredicted RBP25.27■■□□□ 1.64
TRIM28-204ENST00000594806 PRMT5O14744 637 aaPredicted RBP25.27■■□□□ 1.64
TRIM28-204ENST00000594806 PPM1DO15297 605 aa25.27■■□□□ 1.64
TRIM28-204ENST00000594806 NDUFS3O75489 264 aa25.27■■□□□ 1.64
TRIM28-204ENST00000594806 MT-CO3P00414 261 aa25.27■■□□□ 1.64
TRIM28-204ENST00000594806 PBLDP30039 288 aaPredicted RBP25.27■■□□□ 1.64
TRIM28-204ENST00000594806 DRG2P55039 364 aaKnown RBP25.27■■□□□ 1.64
TRIM28-204ENST00000594806 PLOD1Q02809 727 aaPredicted RBP25.27■■□□□ 1.64
TRIM28-204ENST00000594806 CAV1Q03135 178 aa25.27■■□□□ 1.64
TRIM28-204ENST00000594806 RPA4Q13156 261 aa25.27■■□□□ 1.64
TRIM28-204ENST00000594806 SEMA3AQ14563 771 aa25.27■■□□□ 1.64
TRIM28-204ENST00000594806 LONRF1Q17RB8 773 aa25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms