RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CFAP61Q8NHU2 1237 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 ZFAND2BQ8WV99 257 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 TRIM44Q96DX7 344 aaPredicted RBP5.79□□□□□ -1.48
VPS53-219ENST00000576019 FAM89AQ96GI7 184 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 LOXL4Q96JB6 756 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 CEP295NLQ96MC4 621 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 LRRC37BQ96QE4 947 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 DIRC2Q96SL1 478 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 ANP32EQ9BTT0 268 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 SEMA4GQ9NTN9 838 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 OLAHQ9NV23 265 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 NEUROG3Q9Y4Z2 214 aa5.79□□□□□ -1.48
VPS53-219ENST00000576019 EPN1Q9Y6I3 576 aaPredicted RBP5.79□□□□□ -1.48
VPS53-219ENST00000576019 COL6A6A6NMZ7 2263 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 SYNRGQ9UMZ2 1314 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 RNF103-CHMP3A0A140T963 221 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 FAM237AA0A1B0GTK4 181 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 TCRBV7S3A2A0A539 114 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 SYCE3A1L190 88 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 TARSL2A2RTX5 802 aaKnown RBP5.78□□□□□ -1.48
VPS53-219ENST00000576019 C9orf118A6NHY6 69 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 KDM4EB2RXH2 506 aaPredicted RBP5.78□□□□□ -1.48
VPS53-219ENST00000576019 MCIDASD6RGH6 385 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 K7EPI3 171 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 RNF103O00237 685 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 SUV39H1O43463 412 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 FOXD2O60548 495 aaPredicted RBP5.78□□□□□ -1.48
VPS53-219ENST00000576019 SMPD2O60906 423 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 ZC3H11AO75152 810 aaKnown RBP eCLIP5.78□□□□□ -1.48
VPS53-219ENST00000576019 CNTN5O94779 1100 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 HEXBP07686 556 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 IL6RP08887 468 aaPredicted RBP5.78□□□□□ -1.48
VPS53-219ENST00000576019 FERP16591 822 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 ITGAXP20702 1163 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 TACR2P21452 398 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 DNASE1P24855 282 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 ITPKBP27987 946 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 HOXA7P31268 230 aaPredicted RBP5.78□□□□□ -1.48
VPS53-219ENST00000576019 RABIFP47224 123 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 GABRB2P47870 512 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 CD97P48960 835 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 DIO1P49895 249 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 ADARP55265 1226 aaKnown RBP5.78□□□□□ -1.48
VPS53-219ENST00000576019 WDR5P61964 334 aaKnown RBP5.78□□□□□ -1.48
VPS53-219ENST00000576019 YWHAZP63104 245 aaKnown RBP5.78□□□□□ -1.48
VPS53-219ENST00000576019 ZBTB16Q05516 673 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 MZT1Q08AG7 82 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 RPE65Q16518 533 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 SNAPC1Q16533 368 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 CYP2A13Q16696 494 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 HIST2H2ACQ16777 129 aaPredicted RBP5.78□□□□□ -1.48
VPS53-219ENST00000576019 ME3Q16798 604 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 TOR1AIP1Q5JTV8 583 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 ARTNQ5T4W7 220 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 XP32Q5T750 250 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 C1QL3Q5VWW1 255 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 KRT39Q6A163 491 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 TMEM211Q6ICI0 200 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 GLB1LQ6UWU2 654 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 SEPT14Q6ZU15 432 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 TAOK1Q7L7X3 1001 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 MDGA2Q7Z553 956 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 ZSWIM9Q86XI8 627 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 RTL3Q8N8U3 475 aaKnown RBP5.78□□□□□ -1.48
VPS53-219ENST00000576019 NHLRC2Q8NBF2 726 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 RBM15BQ8NDT2 890 aaKnown RBP5.78□□□□□ -1.48
VPS53-219ENST00000576019 ADAMTS17Q8TE56 1095 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 SGCDQ92629 289 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 SYAP1Q96A49 352 aaPredicted RBP5.78□□□□□ -1.48
VPS53-219ENST00000576019 NACC2Q96BF6 587 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 LCORQ96JN0 433 aaPredicted RBP5.78□□□□□ -1.48
VPS53-219ENST00000576019 OR14A2Q96R54 314 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 FAM118BQ9BPY3 351 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 TRIM7Q9C029 511 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 NUAK2Q9H093 628 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 TKTL2Q9H0I9 626 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 PLEKHA4Q9H4M7 779 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 CNOT10Q9H9A5 744 aaKnown RBP5.78□□□□□ -1.48
VPS53-219ENST00000576019 Q9N2J8 555 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 INTS13Q9NVM9 706 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 CGNQ9P2M7 1197 aaKnown RBP5.78□□□□□ -1.48
VPS53-219ENST00000576019 ANKMY1Q9P2S6 941 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 IL19Q9UHD0 177 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 APPL1Q9UKG1 709 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 FBXO4Q9UKT5 387 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 DUSP12Q9UNI6 340 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 PIN4Q9Y237 131 aaKnown RBP5.78□□□□□ -1.48
VPS53-219ENST00000576019 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.78□□□□□ -1.48
VPS53-219ENST00000576019 FAM96BQ9Y3D0 163 aa5.78□□□□□ -1.48
VPS53-219ENST00000576019 ACACAQ13085 2346 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 TANC1Q9C0D5 1861 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 TET1Q8NFU7 2136 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 CSMD1Q96PZ7 3565 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 TRGV11A0A075B6L2 103 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 HTR3EA5X5Y0 456 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 ANXA2P2A6NMY6 339 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 SEC14L5O43304 696 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 SIX3O95343 332 aaPredicted RBP5.77□□□□□ -1.49
VPS53-219ENST00000576019 GBAP04062 536 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 ASGR1P07306 291 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms