RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 DNAJC16Q9Y2G8 782 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 KCNMB2Q9Y691 235 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 RPS6KL1Q9Y6S9 549 aa6.6□□□□□ -1.35
VPS53-213ENST00000572334 PCM1Q15154 2024 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 A0A0A6YYK5 440 aaPredicted RBP6.59□□□□□ -1.35
VPS53-213ENST00000572334 IGHV5-51A0A0C4DH38 117 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 TOX3O15405 576 aaPredicted RBP6.59□□□□□ -1.35
VPS53-213ENST00000572334 SGTAO43765 313 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 UGT1A9O60656 530 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 PMPCBO75439 489 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 SPAG6O75602 509 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 KIAA0754O94854 1291 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 CDK14O94921 469 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 VIPP01282 170 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 SLC4A1P02730 911 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 PDGFAP04085 211 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 FGF5P12034 268 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 SLC2A4P14672 509 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 NELFEP18615 380 aaKnown RBP6.59□□□□□ -1.35
VPS53-213ENST00000572334 UGT1A6P19224 532 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 NFKB1P19838 968 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 TCN2P20062 427 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 UGT1A1P22309 533 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 UGT1A4P22310 534 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 HMGCLP35914 325 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 DLSTP36957 453 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 ARHGAP25P42331 645 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 CAPZBP47756 277 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 DMPKQ09013 629 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 TMEM115Q12893 351 aaPredicted RBP6.59□□□□□ -1.35
VPS53-213ENST00000572334 MSLNQ13421 630 aaPredicted RBP6.59□□□□□ -1.35
VPS53-213ENST00000572334 PTPRCAPQ14761 206 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 PDK1Q15118 436 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 LLGL1Q15334 1064 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 INSCQ1MX18 579 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 SIRPB2Q5JXA9 342 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 LRRC38Q5VT99 294 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 ICE2Q659A1 982 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 FAM92BQ6ZTR7 304 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 MICALCLQ6ZW33 695 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 ESX1Q8N693 406 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 RASGEF1AQ8N9B8 481 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 OR8K1Q8NGG5 319 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 C9orf43Q8TAL5 461 aaPredicted RBP6.59□□□□□ -1.35
VPS53-213ENST00000572334 DTX3LQ8TDB6 740 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 NAT14Q8WUY8 206 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 SLC41A2Q96JW4 573 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 OR6C1Q96RD1 312 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 EFHD1Q9BUP0 239 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 GPR63Q9BZJ6 419 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 ULBP3Q9BZM4 244 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 TRIT1Q9H3H1 467 aaKnown RBP6.59□□□□□ -1.35
VPS53-213ENST00000572334 GOLPH3Q9H4A6 298 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 STN1Q9H668 368 aaKnown RBP6.59□□□□□ -1.35
VPS53-213ENST00000572334 UGT1A7Q9HAW7 530 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 UGT1A10Q9HAW8 530 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 UGT1A8Q9HAW9 530 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 POT1Q9NUX5 634 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 IL17CQ9P0M4 197 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 TRIM10Q9UDY6 481 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 ANAPC2Q9UJX6 822 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 CROTQ9UKG9 612 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 TP53TG5Q9Y2B4 290 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 PCDHGA6Q9Y5G7 932 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 NUP210LQ5VU65 1888 aa6.59□□□□□ -1.35
VPS53-213ENST00000572334 TEX15Q9BXT5 2789 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 PDZK1P1A8MUH7 402 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 F5H423 210 aaPredicted RBP6.58□□□□□ -1.36
VPS53-213ENST00000572334 PPP1R12AO14974 1030 aaPredicted RBP6.58□□□□□ -1.36
VPS53-213ENST00000572334 BUD23O43709 281 aaKnown RBP6.58□□□□□ -1.36
VPS53-213ENST00000572334 MFAP3LO75121 409 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 NDUFA10O95299 355 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 KRT1P04264 644 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 FOLR1P15328 257 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 AMD1P17707 334 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 COMTP21964 271 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 FECHP22830 423 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 CASQ1P31415 396 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 CD97P48960 835 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 MARCKSL1P49006 195 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 PPM1FP49593 454 aaPredicted RBP6.58□□□□□ -1.36
VPS53-213ENST00000572334 WNT3AP56704 352 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 DYNLT1P63172 113 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 FOXM1Q08050 763 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 OLIG2Q13516 323 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 ERV3-1Q14264 604 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 NFE2L1Q14494 772 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 IL11RAQ14626 422 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 KCNAB1Q14722 419 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 CHRNA6Q15825 494 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 RPE65Q16518 533 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS53-213ENST00000572334 CACHD1Q5VU97 1274 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 PWWP2BQ6NUJ5 590 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 C16orf46Q6P387 395 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 C6orf15Q6UXA7 325 aaPredicted RBP6.58□□□□□ -1.36
VPS53-213ENST00000572334 SPOCD1Q6ZMY3 1216 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 ZNF517Q6ZMY9 492 aaPredicted RBP6.58□□□□□ -1.36
VPS53-213ENST00000572334 RFX6Q8HWS3 928 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 VSTM4Q8IW00 320 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms