RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 SKA1Q96BD8 255 aa12.63□□□□□ -0.39
CLK3-214ENST00000564096 FAM136AQ96C01 138 aa12.63□□□□□ -0.39
CLK3-214ENST00000564096 SGF29Q96ES7 293 aa12.63□□□□□ -0.39
CLK3-214ENST00000564096 CCDC97Q96F63 343 aaPredicted RBP12.63□□□□□ -0.39
CLK3-214ENST00000564096 CCM2Q9BSQ5 444 aa12.63□□□□□ -0.39
CLK3-214ENST00000564096 ATXN10Q9UBB4 475 aa12.63□□□□□ -0.39
CLK3-214ENST00000564096 MBD1Q9UIS9 605 aaPredicted RBP12.63□□□□□ -0.39
CLK3-214ENST00000564096 GRID1Q9ULK0 1009 aa12.63□□□□□ -0.39
CLK3-214ENST00000564096 SLC17A4Q9Y2C5 497 aa12.63□□□□□ -0.39
CLK3-214ENST00000564096 DHRS7Q9Y394 339 aa12.63□□□□□ -0.39
CLK3-214ENST00000564096 PABPN1LA6NDY0 278 aaKnown RBP12.62□□□□□ -0.39
CLK3-214ENST00000564096 IQCF5A8MTL0 148 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 TNFRSF10AO00220 468 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 LIN7AO14910 233 aaPredicted RBP12.62□□□□□ -0.39
CLK3-214ENST00000564096 KMOO15229 486 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 TYROBPO43914 113 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 SPAG7O75391 227 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 KLHL2O95198 593 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 ZNF8P17098 575 aaPredicted RBP12.62□□□□□ -0.39
CLK3-214ENST00000564096 CNR2P34972 360 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 CTSCP53634 463 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 CLDN2P57739 230 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 RACK1P63244 317 aaKnown RBP12.62□□□□□ -0.39
CLK3-214ENST00000564096 DMWDQ09019 674 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 CSHL1Q14406 222 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 ZNF528Q3MIS6 628 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 PLEKHS1Q5SXH7 462 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 ZNF648Q5T619 568 aaPredicted RBP12.62□□□□□ -0.39
CLK3-214ENST00000564096 KDM7AQ6ZMT4 941 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 CLEC14AQ86T13 490 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 DCP2Q8IU60 420 aaKnown RBP12.62□□□□□ -0.39
CLK3-214ENST00000564096 CPNE9Q8IYJ1 553 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 FRMD1Q8N878 549 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 ANKRD42Q8N9B4 389 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 CCDC63Q8NA47 563 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 OR56A4Q8NGH8 313 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 LKAAEAR1Q8TD35 194 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 ASZ1Q8WWH4 475 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 GAB3Q8WWW8 586 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 SREK1Q8WXA9 508 aaKnown RBP12.62□□□□□ -0.39
CLK3-214ENST00000564096 GLMNQ92990 594 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 TMEM159Q96B96 161 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 LINGO1Q96FE5 620 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 LINC00615Q96LM1 132 aaPredicted RBP12.62□□□□□ -0.39
CLK3-214ENST00000564096 DERL2Q9GZP9 239 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 DUSP15Q9H1R2 295 aaPredicted RBP12.62□□□□□ -0.39
CLK3-214ENST00000564096 NMRAL1Q9HBL8 299 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 KLQ9UEF7 1012 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 INVSQ9Y283 1065 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 MED16Q9Y2X0 877 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 TMEM98Q9Y2Y6 226 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 DNMT3AQ9Y6K1 912 aaPredicted RBP12.62□□□□□ -0.39
CLK3-214ENST00000564096 TECTAO75443 2155 aa12.62□□□□□ -0.39
CLK3-214ENST00000564096 C17orf113A0A1B0GUU1 675 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 POM121BA6NF01 834 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 FOXO6A8MYZ6 492 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 TNFRSF10CO14798 259 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 CHUKO15111 745 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 GRID2O43424 1007 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 KCNJ13O60928 360 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 WISP3O95389 354 aaPredicted RBP12.61□□□□□ -0.39
CLK3-214ENST00000564096 RBP1P09455 135 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 CCDC166P0CW27 439 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 BCKDHBP21953 392 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 AOAHP28039 575 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 PBLDP30039 288 aaPredicted RBP12.61□□□□□ -0.39
CLK3-214ENST00000564096 DPP6P42658 865 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 NUBP1P53384 320 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 IRF9Q00978 393 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 LRP8Q14114 963 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 PPM1JQ5JR12 505 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 N4BP2L1Q5TBK1 243 aaPredicted RBP12.61□□□□□ -0.39
CLK3-214ENST00000564096 LYSMD4Q5XG99 296 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 PAQR3Q6TCH7 311 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 Q6ZSR6 202 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 SH2D5Q6ZV89 423 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 IQCHQ86VS3 1027 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 RGL4Q8IZJ4 473 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 OXR1Q8N573 874 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 GIMAP7Q8NHV1 300 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 TCP10LQ8TDR4 215 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 KCTD4Q8WVF5 259 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 DYDC1Q8WWB3 177 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 SCYL1Q96KG9 808 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 SLC6A18Q96N87 628 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 OR2M4Q96R27 311 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 TIMM29Q9BSF4 260 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 LGR4Q9BXB1 951 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 MIR1-1HGQ9H1L0 117 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 MRPL46Q9H2W6 279 aaKnown RBP12.61□□□□□ -0.39
CLK3-214ENST00000564096 LATS2Q9NRM7 1088 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 FAM53CQ9NYF3 392 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 OGFRQ9NZT2 677 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 SUSD2Q9UGT4 822 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 MOSPD1Q9UJG1 213 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 CA5BQ9Y2D0 317 aa12.61□□□□□ -0.39
CLK3-214ENST00000564096 PLXND1Q9Y4D7 1925 aa12.6□□□□□ -0.39
CLK3-214ENST00000564096 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.6□□□□□ -0.39
CLK3-214ENST00000564096 PRSS38A1L453 326 aa12.6□□□□□ -0.39
CLK3-214ENST00000564096 MGAT4DA6NG13 374 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms