RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 RPS9P46781 194 aaKnown RBP11.06□□□□□ -0.64
USP3-218ENST00000560202 CTSCP53634 463 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 ATP6V0D1P61421 351 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 INPP5AQ14642 412 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 OTOAQ7RTW8 1153 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 ADGRG6Q86SQ4 1221 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 ISCA2Q86U28 154 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 TRIM74Q86UV6 250 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 TRIM69Q86WT6 500 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 HEATR4Q86WZ0 1026 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 NUDCD3Q8IVD9 361 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 CPNE9Q8IYJ1 553 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 ZBTB2Q8N680 514 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 RDH11Q8TC12 318 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 EEF1AKMT1Q8WVE0 214 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 LINGO1Q96FE5 620 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 COX14Q96I36 57 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 MRPL57Q9BQC6 102 aaKnown RBP11.06□□□□□ -0.64
USP3-218ENST00000560202 MECRQ9BV79 373 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 TSSK1BQ9BXA7 367 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 TEX101Q9BY14 249 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 ZCCHC2Q9C0B9 1178 aaKnown RBP11.06□□□□□ -0.64
USP3-218ENST00000560202 DERL2Q9GZP9 239 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 BATF3Q9NR55 127 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 KLHL42Q9P2K6 505 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 COPG2Q9UBF2 871 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 XPR1Q9UBH6 696 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 MID2Q9UJV3 735 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 CYP8B1Q9UNU6 501 aa11.06□□□□□ -0.64
USP3-218ENST00000560202 OR2AG2A6NM03 316 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 G3V2L1 256 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 RAD51BO15315 384 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 SLC31A1O15431 190 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 ZBTB14O43829 449 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 VEGFDO43915 354 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 ZNF217O75362 1048 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 CDK14O94921 469 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 SEMA4FO95754 770 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 FAM107AO95990 144 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 FTH1P02794 183 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 NEFHP12036 1026 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 TFEBP19484 476 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 TAC1P20366 129 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 DGKAP23743 735 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 OXTRP30559 389 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 ALDH3A1P30838 453 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 CCR7P32248 378 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 TRIM23P36406 574 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 SEC24CP53992 1094 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 CDK3Q00526 305 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 MTAPQ13126 283 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 PCLAFQ15004 111 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 SNCBQ16143 134 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 TTLL9Q3SXZ7 439 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 TECRLQ5HYJ1 363 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 TMEM220Q6QAJ8 160 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 RGS9BPQ6ZS82 235 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 BEND7Q8N7W2 519 aaPredicted RBP11.05□□□□□ -0.64
USP3-218ENST00000560202 LRRC8CQ8TDW0 803 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 ZNF75CPQ92670 426 aaPredicted RBP11.05□□□□□ -0.64
USP3-218ENST00000560202 PTERQ96BW5 349 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 PDLIM5Q96HC4 596 aaKnown RBP11.05□□□□□ -0.64
USP3-218ENST00000560202 OR2AG1Q9H205 316 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 TFB2MQ9H5Q4 396 aaKnown RBP11.05□□□□□ -0.64
USP3-218ENST00000560202 EPHX3Q9H6B9 360 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 ALG9Q9H6U8 611 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 WDR26Q9H7D7 661 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 MANSC1Q9H8J5 431 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 SIRPGQ9P1W8 387 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 ATXN10Q9UBB4 475 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 PLXNB3Q9ULL4 1909 aa11.05□□□□□ -0.64
USP3-218ENST00000560202 GMNCA6NCL1 334 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 TCP11X1B4DZS4 312 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 KPNA5O15131 536 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 APBB3O95704 486 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 DCNP07585 359 aaKnown RBP11.04□□□□□ -0.64
USP3-218ENST00000560202 MYL2P10916 166 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 BGNP21810 368 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 AOAHP28039 575 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 PRLHRP49683 370 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 RGS4P49798 205 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 GTF2H3Q13889 308 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 ACSBG2Q5FVE4 666 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 ZYG11AQ6WRX3 759 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 NAPRTQ6XQN6 538 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 C10orf107Q8IVU9 208 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 TRIM42Q8IWZ5 723 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 CHMP6Q96FZ7 201 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 TOE1Q96GM8 510 aaKnown RBP11.04□□□□□ -0.64
USP3-218ENST00000560202 NECAB3Q96P71 396 aaPredicted RBP11.04□□□□□ -0.64
USP3-218ENST00000560202 ZNF317Q96PQ6 595 aaPredicted RBP11.04□□□□□ -0.64
USP3-218ENST00000560202 LGR4Q9BXB1 951 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 FZD3Q9NPG1 666 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 WSB2Q9NYS7 404 aaPredicted RBP11.04□□□□□ -0.64
USP3-218ENST00000560202 IKZF3Q9UKT9 509 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 TMEM98Q9Y2Y6 226 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 OR1A2Q9Y585 309 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 LRRK1Q38SD2 2015 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 C10orf142B7Z368 130 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 VIMP08670 466 aaKnown RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 151.2 ms