RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 C4BPAP04003 597 aaKnown RBP5.21□□□□□ -1.58
USP28-213ENST00000544967 ENO3P13929 434 aaPredicted RBP5.21□□□□□ -1.58
USP28-213ENST00000544967 RCVRNP35243 200 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 ALDH7A1P49419 539 aaKnown RBP5.21□□□□□ -1.58
USP28-213ENST00000544967 RAD23AP54725 363 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 DEFA1P59665 94 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 DEFA3P59666 94 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 NME3Q13232 169 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 SURF1Q15526 300 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 UPP1Q16831 310 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 YIF1BQ5BJH7 314 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 TOR1AIP1Q5JTV8 583 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 BRMS1LQ5PSV4 323 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 SLC9A4Q6AI14 798 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 TIGD3Q6B0B8 471 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 THAP5Q7Z6K1 395 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 SLC22A16Q86VW1 577 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 CLEC4FQ8N1N0 589 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 CBR4Q8N4T8 237 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 AADATQ8N5Z0 425 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 OR13J1Q8NGT2 312 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 OR6F1Q8NGZ6 308 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 URGCPQ8TCY9 931 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 YIPF6Q96EC8 236 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 OR52B2Q96RD2 323 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 CDK5RAP1Q96SZ6 601 aaKnown RBP5.21□□□□□ -1.58
USP28-213ENST00000544967 CSF3RQ99062 836 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 TBCBQ99426 244 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 CCDC32Q9BV29 185 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 BTBD2Q9BX70 525 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 LHPPQ9H008 270 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 NOL11Q9H8H0 719 aaKnown RBP5.21□□□□□ -1.58
USP28-213ENST00000544967 LRRC40Q9H9A6 602 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 LIN7BQ9HAP6 207 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 FANCEQ9HB96 536 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 SACM1LQ9NTJ5 587 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 RBAKQ9NYW8 714 aaPredicted RBP5.21□□□□□ -1.58
USP28-213ENST00000544967 VPS51Q9UID3 782 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 STAP1Q9ULZ2 295 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 TRAPPC4Q9Y296 219 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 TLR6Q9Y2C9 796 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 MTF2Q9Y483 593 aaPredicted RBP5.21□□□□□ -1.58
USP28-213ENST00000544967 AUP1Q9Y679 476 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 HACD1B0YJ81 288 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 PI4K2BG5E9Z4 385 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 BMP4P12644 408 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 SYN1P17600 705 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 FGFR3P22607 806 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 SPRP35270 261 aaPredicted RBP5.21□□□□□ -1.58
USP28-213ENST00000544967 PPM1AP35813 382 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 GJC1P36383 396 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 NR2C2P49116 596 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 ERFP50548 548 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 LIMK2P53671 638 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 PPP2R2BQ00005 443 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 GRIK2Q13002 908 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 AQP6Q13520 282 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 CAMK1Q14012 370 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 SSPNQ14714 243 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 GRM3Q14832 879 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 REP15Q6BDI9 236 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 FAM122CQ6P4D5 195 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 RETREG3Q86VR2 466 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 WDR49Q8IV35 697 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 LRRC52Q8N7C0 313 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 PPP1R13LQ8WUF5 828 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 FATE1Q969F0 183 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 ZNF560Q96MR9 790 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 FAM118BQ9BPY3 351 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 MCMBPQ9BTE3 642 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 FUNDC2Q9BWH2 189 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 NAA50Q9GZZ1 169 aaKnown RBP5.21□□□□□ -1.58
USP28-213ENST00000544967 ZBP1Q9H171 429 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 TNKS2Q9H2K2 1166 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 SYNDIG1Q9H7V2 258 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 CCDC59Q9P031 241 aaKnown RBP5.21□□□□□ -1.58
USP28-213ENST00000544967 OSGIN1Q9UJX0 560 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.21□□□□□ -1.58
USP28-213ENST00000544967 COPG1Q9Y678 874 aaKnown RBP5.21□□□□□ -1.58
USP28-213ENST00000544967 CSNK1G3Q9Y6M4 447 aa5.21□□□□□ -1.58
USP28-213ENST00000544967 C17orf113A0A1B0GUU1 675 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 ZW10O43264 779 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 TULP3O75386 442 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 LRCH4O75427 683 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 NPPAP01160 153 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 GFAPP14136 432 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 PCMT1P22061 227 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 RYKP34925 604 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 YWHAEP62258 255 aaKnown RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 SGCGQ13326 291 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 ANO4Q32M45 955 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 NOMO2Q5JPE7 1267 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 HECTD3Q5T447 861 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 LIN54Q6MZP7 749 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 LETMD1Q6P1Q0 360 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 DCUN1D2Q6PH85 259 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 SHQ1Q6PI26 577 aaKnown RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 TMC5Q6UXY8 1006 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 CHRDL2Q6WN34 429 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 ATG14Q6ZNE5 492 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms