RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 APPL2Q8NEU8 664 aa4.68□□□□□ -1.66
HMGB1P38-201ENST00000490557 RSRC1Q96IZ7 334 aaKnown RBP4.68□□□□□ -1.66
HMGB1P38-201ENST00000490557 DACH2Q96NX9 599 aa4.68□□□□□ -1.66
HMGB1P38-201ENST00000490557 KIFC3Q9BVG8 833 aa4.68□□□□□ -1.66
HMGB1P38-201ENST00000490557 TRPC7Q9HCX4 862 aa4.68□□□□□ -1.66
HMGB1P38-201ENST00000490557 FAM118AQ9NWS6 357 aa4.68□□□□□ -1.66
HMGB1P38-201ENST00000490557 TRMT1Q9NXH9 659 aaKnown RBP4.68□□□□□ -1.66
HMGB1P38-201ENST00000490557 PSD3Q9NYI0 1048 aa4.68□□□□□ -1.66
HMGB1P38-201ENST00000490557 KLHL9Q9P2J3 617 aa4.68□□□□□ -1.66
HMGB1P38-201ENST00000490557 DNAJB4Q9UDY4 337 aa4.68□□□□□ -1.66
HMGB1P38-201ENST00000490557 AMACRQ9UHK6 382 aa4.68□□□□□ -1.66
HMGB1P38-201ENST00000490557 TSPYL4Q9UJ04 414 aa4.68□□□□□ -1.66
HMGB1P38-201ENST00000490557 ZNF112Q9UJU3 913 aa4.68□□□□□ -1.66
HMGB1P38-201ENST00000490557 PCDHGB4Q9UN71 923 aa4.68□□□□□ -1.66
HMGB1P38-201ENST00000490557 YIPF1Q9Y548 306 aa4.68□□□□□ -1.66
HMGB1P38-201ENST00000490557 PRR23D1E9PI22 279 aaPredicted RBP4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 K7ENM7 598 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 BMPR1BO00238 502 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 PLK4O00444 970 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 NDUFS4O43181 175 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 SYNGR3O43761 229 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 LMX1BO60663 402 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 PRR23D2P0DMB1 279 aaPredicted RBP4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 CSF2RAP15509 400 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 GJA1P17302 382 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 MCCP23508 829 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 NMBRP28336 390 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 ACTN2P35609 894 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 ARCN1P48444 511 aaKnown RBP4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 LMAN1P49257 510 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 ARSEP51690 589 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 SNRPEP62304 92 aaKnown RBP4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 PHEXP78562 749 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 SPOCK1Q08629 439 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 ARL16Q0P5N6 197 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 STK4Q13043 487 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 PLA2G7Q13093 441 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 STPG1Q5TH74 334 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 KRTAP5-3Q6L8H2 238 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 PACS1Q6VY07 963 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 INTS8Q75QN2 995 aaKnown RBP4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 ZNF534Q76KX8 674 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 TRMT1LQ7Z2T5 733 aaKnown RBP4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 GALNT13Q8IUC8 556 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 CEP97Q8IW35 865 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 LRRC59Q96AG4 307 aaKnown RBP4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 KRTAP1-5Q9BYS1 174 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 DENND2DQ9H6A0 471 aaPredicted RBP4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 MRPL15Q9P015 296 aaKnown RBP4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 NRBP1Q9UHY1 535 aa4.67□□□□□ -1.66
HMGB1P38-201ENST00000490557 LOC100509620A0A075B734 347 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 IGLV5-45A0A087WSX0 123 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 FAM172BPA6NC97 362 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 A8MV72 311 aaPredicted RBP4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 H0YIN7 160 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 AVILO75366 819 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 GJB3O75712 270 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 PDE9AO76083 593 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 STARD3NLO95772 234 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 CAVIN2O95810 425 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 IGLV2-11P01706 119 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 GM2AP17900 193 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 STAT2P52630 851 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 PNLIPRP2P54317 469 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 ILF3Q12906 894 aaKnown RBP eCLIP4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 GAGE2BQ13066 116 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 C15orf59Q2T9L4 293 aaPredicted RBP4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 GAGE2EQ4V326 116 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 FAM98BQ52LJ0 330 aaKnown RBP4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 IGSF11Q5DX21 431 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 CFAP58Q5T655 872 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 NDUFAF5Q5TEU4 345 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 GAGE2AQ6NT46 116 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 TMCO3Q6UWJ1 677 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 Q75L30 129 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 SLC26A9Q7LBE3 791 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 ATG9AQ7Z3C6 839 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 NFE4Q86UQ8 179 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 TBC1D16Q8TBP0 767 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 UHRF2Q96PU4 802 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 PAFAH2Q99487 392 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 GFI1Q99684 422 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 GAGE2DQ9UEU5 116 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 CHORDC1Q9UHD1 332 aaPredicted RBP4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 HACL1Q9UJ83 578 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 PTRH2Q9Y3E5 179 aaKnown RBP4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 SCN5AQ14524 2016 aa4.66□□□□□ -1.66
HMGB1P38-201ENST00000490557 LNP1A1A4G5 178 aa4.65□□□□□ -1.67
HMGB1P38-201ENST00000490557 OR2M5A3KFT3 312 aa4.65□□□□□ -1.67
HMGB1P38-201ENST00000490557 OR2A25A4D2G3 310 aa4.65□□□□□ -1.67
HMGB1P38-201ENST00000490557 PRSS47A8MTI9 375 aa4.65□□□□□ -1.67
HMGB1P38-201ENST00000490557 BEST1O76090 585 aa4.65□□□□□ -1.67
HMGB1P38-201ENST00000490557 TFAP2AP05549 437 aa4.65□□□□□ -1.67
HMGB1P38-201ENST00000490557 LIPFP07098 398 aa4.65□□□□□ -1.67
HMGB1P38-201ENST00000490557 PSMC4P43686 418 aa4.65□□□□□ -1.67
HMGB1P38-201ENST00000490557 SUOXP51687 545 aa4.65□□□□□ -1.67
HMGB1P38-201ENST00000490557 RUNX1T1Q06455 604 aa4.65□□□□□ -1.67
HMGB1P38-201ENST00000490557 DUOXA1Q1HG43 343 aa4.65□□□□□ -1.67
HMGB1P38-201ENST00000490557 ALS2CLQ60I27 953 aa4.65□□□□□ -1.67
HMGB1P38-201ENST00000490557 ADALQ6DHV7 355 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms