RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 SNX2O60749 519 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 AVILO75366 819 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 NDUFS3O75489 264 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 VAPBO95292 243 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 SLC35G4P0C7Q5 338 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 CTAGE8P0CG41 777 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 IVDP26440 423 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 NMBRP28336 390 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 GPLD1P80108 840 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 HHEXQ03014 270 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 RPA4Q13156 261 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 THOC5Q13769 683 aaKnown RBP14.39□□□□□ -0.11
LIMS3-205ENST00000487150 SPIDRQ14159 915 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 NR1D2Q14995 579 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 LONRF1Q17RB8 773 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 IYDQ6PHW0 289 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 ABRAXAS1Q6UWZ7 409 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 TMPRSS7Q7RTY8 843 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 C11orf96Q7Z7L8 435 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 CTAGE6Q86UF2 777 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 CTAGE4Q8IX94 777 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 NAGSQ8N159 534 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 ARL14Q8N4G2 192 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.39□□□□□ -0.11
LIMS3-205ENST00000487150 SLC37A2Q8TED4 501 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 ZNF669Q96BR6 464 aaPredicted RBP14.39□□□□□ -0.11
LIMS3-205ENST00000487150 MFSD3Q96ES6 412 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 SGF29Q96ES7 293 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 PANX3Q96QZ0 392 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 CCDC3Q9BQI4 270 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 FAM167BQ9BTA0 163 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 FAM129AQ9BZQ8 928 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 TRIM31Q9BZY9 425 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 PHACTR1Q9C0D0 580 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 FAM96AQ9H5X1 160 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 UCK1Q9HA47 277 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 GNPTGQ9UJJ9 305 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 HEBP2Q9Y5Z4 205 aa14.39□□□□□ -0.11
LIMS3-205ENST00000487150 SCN8AQ9UQD0 1980 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 OR51F1A6NGY5 319 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 PRR19A6NJB7 356 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 PRMT5O14744 637 aaPredicted RBP14.38□□□□□ -0.11
LIMS3-205ENST00000487150 RAD51CO43502 376 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 JUPP14923 745 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 NDUFS1P28331 727 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 PBLDP30039 288 aaPredicted RBP14.38□□□□□ -0.11
LIMS3-205ENST00000487150 ITGA8P53708 1063 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 EPHA4P54764 986 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 MAZP56270 477 aaKnown RBP14.38□□□□□ -0.11
LIMS3-205ENST00000487150 B4GALNT1Q00973 533 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 TMED2Q15363 201 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 TYSND1Q2T9J0 566 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 ANKRD20A4Q4UJ75 823 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 SPANXN3Q5MJ09 141 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 HES3Q5TGS1 186 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 METRNLQ641Q3 311 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 RBM44Q6ZP01 1051 aaKnown RBP14.38□□□□□ -0.11
LIMS3-205ENST00000487150 CEP112Q8N8E3 955 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 PNPLA1Q8N8W4 532 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 GPR150Q8NGU9 434 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 CXorf40BQ96DE9 158 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 SLC38A3Q99624 504 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 CAAP1Q9H8G2 361 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 INTS10Q9NVR2 710 aaKnown RBP14.38□□□□□ -0.11
LIMS3-205ENST00000487150 CLCA2Q9UQC9 943 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 PLEKHM1Q9Y4G2 1056 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 PCDHB1Q9Y5F3 818 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 PCYT1BQ9Y5K3 369 aaPredicted RBP14.38□□□□□ -0.11
LIMS3-205ENST00000487150 ST14Q9Y5Y6 855 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 RNF215Q9Y6U7 377 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 LRP4O75096 1905 aa14.38□□□□□ -0.11
LIMS3-205ENST00000487150 ZNF106Q9H2Y7 1883 aaKnown RBP14.38□□□□□ -0.11
LIMS3-205ENST00000487150 MED19A0JLT2 244 aaPredicted RBP14.37□□□□□ -0.11
LIMS3-205ENST00000487150 LILRA5A6NI73 299 aa14.37□□□□□ -0.11
LIMS3-205ENST00000487150 IFRD1O00458 451 aaPredicted RBP14.37□□□□□ -0.11
LIMS3-205ENST00000487150 LIN7AO14910 233 aaPredicted RBP14.37□□□□□ -0.11
LIMS3-205ENST00000487150 KPNA5O15131 536 aa14.37□□□□□ -0.11
LIMS3-205ENST00000487150 EIF3HO15372 352 aaKnown RBP eCLIP14.37□□□□□ -0.11
LIMS3-205ENST00000487150 HYAL3O43820 417 aaPredicted RBP14.37□□□□□ -0.11
LIMS3-205ENST00000487150 VIPP01282 170 aa14.37□□□□□ -0.11
LIMS3-205ENST00000487150 XRCC1P18887 633 aaPredicted RBP14.37□□□□□ -0.11
LIMS3-205ENST00000487150 RPS3P23396 243 aaKnown RBP eCLIP14.37□□□□□ -0.11
LIMS3-205ENST00000487150 RPL21P46778 160 aaKnown RBP14.37□□□□□ -0.11
LIMS3-205ENST00000487150 ADARP55265 1226 aaKnown RBP14.37□□□□□ -0.11
LIMS3-205ENST00000487150 INSM1Q01101 510 aaPredicted RBP14.37□□□□□ -0.11
LIMS3-205ENST00000487150 ILF2Q12905 390 aaKnown RBP14.37□□□□□ -0.11
LIMS3-205ENST00000487150 BBS9Q3SYG4 887 aa14.37□□□□□ -0.11
LIMS3-205ENST00000487150 SYTL3Q4VX76 610 aa14.37□□□□□ -0.11
LIMS3-205ENST00000487150 GLE1Q53GS7 698 aaKnown RBP14.37□□□□□ -0.11
LIMS3-205ENST00000487150 NEPROQ6NW34 567 aa14.37□□□□□ -0.11
LIMS3-205ENST00000487150 CEP128Q6ZU80 1094 aa14.37□□□□□ -0.11
LIMS3-205ENST00000487150 CENPUQ71F23 418 aa14.37□□□□□ -0.11
LIMS3-205ENST00000487150 SPRED1Q7Z699 444 aa14.37□□□□□ -0.11
LIMS3-205ENST00000487150 CHCHD4Q8N4Q1 142 aa14.37□□□□□ -0.11
LIMS3-205ENST00000487150 OR10G6Q8NH81 332 aa14.37□□□□□ -0.11
LIMS3-205ENST00000487150 TMEM74Q96NL1 305 aa14.37□□□□□ -0.11
LIMS3-205ENST00000487150 GFM1Q96RP9 751 aaKnown RBP14.37□□□□□ -0.11
LIMS3-205ENST00000487150 EBNA1BP2Q99848 306 aaKnown RBP14.37□□□□□ -0.11
LIMS3-205ENST00000487150 FOXP3Q9BZS1 431 aa14.37□□□□□ -0.11
LIMS3-205ENST00000487150 ZMYND15Q9H091 742 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms