RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 C2orf42Q9NWW7 574 aa6.18□□□□□ -1.42
SF3B1-209ENST00000479532 USP36Q9P275 1121 aaKnown RBP6.18□□□□□ -1.42
SF3B1-209ENST00000479532 DKK3Q9UBP4 350 aa6.18□□□□□ -1.42
SF3B1-209ENST00000479532 FAM153AQ9UHL3 310 aa6.18□□□□□ -1.42
SF3B1-209ENST00000479532 TMEFF2Q9UIK5 374 aaPredicted RBP6.18□□□□□ -1.42
SF3B1-209ENST00000479532 PHTF1Q9UMS5 762 aa6.18□□□□□ -1.42
SF3B1-209ENST00000479532 RPL26L1Q9UNX3 145 aaKnown RBP6.18□□□□□ -1.42
SF3B1-209ENST00000479532 MAPRE3Q9UPY8 281 aa6.18□□□□□ -1.42
SF3B1-209ENST00000479532 RAI2Q9Y5P3 530 aa6.18□□□□□ -1.42
SF3B1-209ENST00000479532 CAPN7Q9Y6W3 813 aa6.18□□□□□ -1.42
SF3B1-209ENST00000479532 PLXND1Q9Y4D7 1925 aa6.18□□□□□ -1.42
SF3B1-209ENST00000479532 TBC1D3DA0A087WVF3 549 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 TBC1D3IA0A087WXS9 549 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 TBC1D3EA0A087X179 549 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 TBC1D3KA0A087X1G2 549 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 TSPAN11A1L157 253 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 TBC1D3FA6NER0 549 aaPredicted RBP6.17□□□□□ -1.42
SF3B1-209ENST00000479532 FAM47DPA6NHR8 397 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 ERI2A8K979 691 aaKnown RBP6.17□□□□□ -1.42
SF3B1-209ENST00000479532 MEI4A8MW99 385 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 TBC1D3LB9A6J9 549 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 AP3B1O00203 1094 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 AQP7O14520 342 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 MUSKO15146 869 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 HTRA2O43464 458 aaPredicted RBP6.17□□□□□ -1.42
SF3B1-209ENST00000479532 TSPAN6O43657 245 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 PLRG1O43660 514 aaKnown RBP6.17□□□□□ -1.42
SF3B1-209ENST00000479532 AP1G1O43747 822 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 PMPCBO75439 489 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 PCDH8O95206 1070 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 PGLSO95336 258 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 CRTAMO95727 393 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 SEMA4FO95754 770 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 SYF2O95926 243 aaKnown RBP6.17□□□□□ -1.42
SF3B1-209ENST00000479532 IGLV3-19P01714 112 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 KRT14P02533 472 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 TBC1D3HP0C7X1 549 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 IDO1P14902 403 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 HLA-DPA1P20036 260 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 PSMB4P28070 264 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 GKP32189 559 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 NUDT1P36639 197 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 P2RY2P41231 377 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 KCNJ1P48048 391 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 PSMD7P51665 324 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 ADPRHP54922 357 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 BASP1P80723 227 aaKnown RBP6.17□□□□□ -1.42
SF3B1-209ENST00000479532 CDK18Q07002 472 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 CNTN1Q12860 1018 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 LAMB3Q13751 1172 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 ARHGEF7Q14155 803 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 UGP2Q16851 508 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 SYCP2LQ5T4T6 812 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 HHATQ5VTY9 493 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 ALS2CLQ60I27 953 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 TBC1D3GQ6DHY5 549 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 TBC1D3CQ6IPX1 549 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 NAPEPLDQ6IQ20 393 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 KIAA1161Q6NSJ0 714 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 NEK5Q6P3R8 708 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 SLC23A3Q6PIS1 610 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 PPP1R21Q6ZMI0 780 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 PRR23BQ6ZRT6 265 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 PARS2Q7L3T8 475 aaKnown RBP6.17□□□□□ -1.42
SF3B1-209ENST00000479532 LPCAT2Q7L5N7 544 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 TMPRSS7Q7RTY8 843 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 ARHGAP22Q7Z5H3 698 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 PCGF5Q86SE9 256 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 LINC00523Q86TU6 105 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 PRPF39Q86UA1 669 aaKnown RBP6.17□□□□□ -1.42
SF3B1-209ENST00000479532 CAMK1DQ8IU85 385 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 CCDC103Q8IW40 242 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 KLHL7Q8IXQ5 586 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 MAML2Q8IZL2 1156 aaPredicted RBP6.17□□□□□ -1.42
SF3B1-209ENST00000479532 TBC1D3Q8IZP1 549 aaPredicted RBP6.17□□□□□ -1.42
SF3B1-209ENST00000479532 AADATQ8N5Z0 425 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 CNTD1Q8N815 330 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 LPCAT1Q8NF37 534 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 IPMKQ8NFU5 416 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 CADM4Q8NFZ8 388 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 OR2T34Q8NGX1 318 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 ARRDC2Q8TBH0 407 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 BCAS4Q8TDM0 211 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 C17orf50Q8WW18 174 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 ARRDC3Q96B67 414 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 TOE1Q96GM8 510 aaKnown RBP6.17□□□□□ -1.42
SF3B1-209ENST00000479532 FEM1CQ96JP0 617 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 C20orf173Q96LM9 149 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 TDRD1Q9BXT4 1180 aaKnown RBP6.17□□□□□ -1.42
SF3B1-209ENST00000479532 CAPS2Q9BXY5 557 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 DDX47Q9H0S4 455 aaKnown RBP6.17□□□□□ -1.42
SF3B1-209ENST00000479532 NEUROG2Q9H2A3 272 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 C10orf88Q9H8K7 445 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 LRRC40Q9H9A6 602 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 PCDH9Q9HC56 1237 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 PREBQ9HCU5 417 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 SMARCAL1Q9NZC9 954 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 ASIC3Q9UHC3 531 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 SARDHQ9UL12 918 aa6.17□□□□□ -1.42
SF3B1-209ENST00000479532 CHKBQ9Y259 395 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms