RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 TACR2P21452 398 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 ALDH4A1P30038 563 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 SLC26A3P40879 764 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 HSPA7P48741 367 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 TRIM32Q13049 653 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 DUSP4Q13115 394 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 RFTN2Q52LD8 501 aaPredicted RBP11.99□□□□□ -0.49
CLIP3-201ENST00000360535 NADSYN1Q6IA69 706 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 GLB1LQ6UWU2 654 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 Q6ZSR9 355 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 SPRED1Q7Z699 444 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 DENND1CQ8IV53 801 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 PACRGLQ8N7B6 248 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 RHEBL1Q8TAI7 183 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 OSCP1Q8WVF1 389 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 PFDN4Q9NQP4 134 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 AFF4Q9UHB7 1163 aaKnown RBP11.99□□□□□ -0.49
CLIP3-201ENST00000360535 PCDHB5Q9Y5E4 795 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 GOLGA4Q13439 2230 aaKnown RBP11.99□□□□□ -0.49
CLIP3-201ENST00000360535 HTTP42858 3142 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 LCHNA4D1U4 455 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 H0Y626 953 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 HS6ST1O60243 411 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 TRIM16O95361 564 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 HTR7P34969 479 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 ERVK-8P63133 956 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 VARS2Q5ST30 1063 aaKnown RBP11.98□□□□□ -0.49
CLIP3-201ENST00000360535 GCNT7Q6ZNI0 430 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 R3HCC1LQ7Z5L2 792 aaKnown RBP11.98□□□□□ -0.49
CLIP3-201ENST00000360535 SPATA19Q7Z5L4 167 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 SNX29P2Q8IUI4 249 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 ZNF683Q8IZ20 524 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 BBS5Q8N3I7 341 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 SMYD1Q8NB12 490 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 DDHD1Q8NEL9 900 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 TRPV1Q8NER1 839 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 FAM162AQ96A26 154 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 AURKBQ96GD4 344 aaPredicted RBP11.98□□□□□ -0.49
CLIP3-201ENST00000360535 GLT1D1Q96MS3 346 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 BIRC8Q96P09 236 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 BEGAINQ9BUH8 593 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 DERL2Q9GZP9 239 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 TOR3AQ9H497 397 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 FARSBQ9NSD9 589 aaKnown RBP11.98□□□□□ -0.49
CLIP3-201ENST00000360535 INTS10Q9NVR2 710 aaKnown RBP11.98□□□□□ -0.49
CLIP3-201ENST00000360535 HACD3Q9P035 362 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 CIDEBQ9UHD4 219 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 SH3PXD2BA1X283 911 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 PRAMEF11O60813 436 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 BCL10O95999 233 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 CST1P01037 141 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 OCM2P0CE71 109 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 OCMP0CE72 109 aaPredicted RBP11.98□□□□□ -0.49
CLIP3-201ENST00000360535 BMP1P13497 986 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 CCNA2P20248 432 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 ARSFP54793 590 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 GTDC1Q4AE62 458 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 CCNYL2Q5T2Q4 361 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 CYP20A1Q6UW02 462 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 ZDHHC13Q8IUH4 622 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 CLDN19Q8N6F1 224 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 LRRC3Q9BY71 257 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 CRISPLD1Q9H336 500 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 SLC52A3Q9NQ40 469 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 GKN1Q9NS71 199 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 UBA2Q9UBT2 640 aaPredicted RBP11.98□□□□□ -0.49
CLIP3-201ENST00000360535 ADGRE2Q9UHX3 823 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 BNIP3LO60238 219 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 DEAF1O75398 565 aaPredicted RBP11.98□□□□□ -0.49
CLIP3-201ENST00000360535 RPS17P08708 135 aaKnown RBP11.98□□□□□ -0.49
CLIP3-201ENST00000360535 CYP4B1P13584 511 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 AGXTP21549 392 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 OXCT1P55809 520 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 NR1D2Q14995 579 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 ABRAXAS2Q15018 415 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 TGFBIQ15582 683 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 FAM98BQ52LJ0 330 aaKnown RBP11.98□□□□□ -0.49
CLIP3-201ENST00000360535 PIWIL3Q7Z3Z3 882 aaKnown RBP11.98□□□□□ -0.49
CLIP3-201ENST00000360535 GALNT5Q7Z7M9 940 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 ANKRD46Q86W74 232 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 HID1Q8IV36 788 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 C2orf69Q8N8R5 385 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 OR4F6Q8NGB9 312 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 TBC1D15Q8TC07 691 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 PLEKHA8Q96JA3 519 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 LHPPQ9H008 270 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 NSUN3Q9H649 340 aaKnown RBP11.98□□□□□ -0.49
CLIP3-201ENST00000360535 SELENONQ9NZV5 590 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 VAPAQ9P0L0 249 aa11.98□□□□□ -0.49
CLIP3-201ENST00000360535 WASH4PA8MWX3 477 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 EEDO75530 441 aaKnown RBP11.97□□□□□ -0.49
CLIP3-201ENST00000360535 ASGR1P07306 291 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 THRBP10828 461 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 SLC6A4P31645 630 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 BMXP51813 675 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 FAM174BQ3ZCQ3 159 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 SLC44A4Q53GD3 710 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 TEX26Q8N6G2 289 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 SNX19Q92543 992 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 UPF1Q92900 1129 aaKnown RBP eCLIP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms