RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CLK3P49761 638 aaKnown RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 FCGRTP55899 365 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 IL5RAQ01344 420 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 CHRNEQ04844 493 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 GBX1Q14549 363 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 AAK1Q2M2I8 961 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 TMC5Q6UXY8 1006 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 HID1Q8IV36 788 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 RYBPQ8N488 228 aaPredicted RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 ASCC1Q8N9N2 400 aaKnown RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 PSD4Q8NDX1 1056 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 BEST2Q8NFU1 509 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 FIG4Q92562 907 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 TSGA13Q96PP4 275 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 FCRL5Q96RD9 977 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 RBM4BQ9BQ04 359 aaKnown RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 RBM4Q9BWF3 364 aaKnown RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 NFKBIZQ9BYH8 718 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 BRINP2Q9C0B6 783 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 GLOD4Q9HC38 313 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 ZBTB20Q9HC78 741 aaPredicted RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 FBXL12Q9NXK8 326 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 QPCTLQ9NXS2 382 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 MARCH4Q9P2E8 410 aaPredicted RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 FBXW11Q9UKB1 542 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 AAR2Q9Y312 384 aaKnown RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 PCDHB14Q9Y5E9 798 aa6.72□□□□□ -1.33
VPS39-202ENST00000348544 MRPL42Q9Y6G3 142 aaKnown RBP6.72□□□□□ -1.33
VPS39-202ENST00000348544 TYW5A2RUC4 315 aaKnown RBP6.71□□□□□ -1.34
VPS39-202ENST00000348544 YJEFN3A6XGL0 299 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 TAF4O00268 1085 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 AP3D1O14617 1153 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 BCKDKO14874 412 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 SLC16A6O15403 523 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 PSMD3O43242 534 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 PRKD3O94806 890 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 FTH1P02794 183 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 EDNRBP24530 442 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 DCTP40126 519 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 EPS8Q12929 822 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 TRIP4Q15650 581 aaPredicted RBP6.71□□□□□ -1.34
VPS39-202ENST00000348544 SMN1Q16637 294 aaKnown RBP6.71□□□□□ -1.34
VPS39-202ENST00000348544 AGAP6Q5VW22 663 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 SIGIRRQ6IA17 410 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 CILP2Q8IUL8 1156 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 PLD3Q8IV08 490 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 CCDC103Q8IW40 242 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 CHPFQ8IZ52 775 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 MTMR14Q8NCE2 650 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 PROKR1Q8TCW9 393 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 PROX1Q92786 737 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 RHBDF1Q96CC6 855 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 PABPC5Q96DU9 382 aaKnown RBP6.71□□□□□ -1.34
VPS39-202ENST00000348544 ZHX1-C8orf76Q96EF9 292 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 TSPAN17Q96FV3 270 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 MRGPRX2Q96LB1 330 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 ZNF583Q96ND8 569 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 AGAP4Q96P64 663 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 SLC9A7Q96T83 725 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 DCSTAMPQ9H295 470 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 PLEKHA5Q9HAU0 1116 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 ACOT13Q9NPJ3 140 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 SEMA4BQ9NPR2 832 aaPredicted RBP6.71□□□□□ -1.34
VPS39-202ENST00000348544 WDR70Q9NW82 654 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 ADPRHL2Q9NX46 363 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 USP21Q9UK80 565 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 CARD8Q9Y2G2 431 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 ZNF236Q9UL36 1845 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 COL1A2P08123 1366 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 ZSWIM8A7E2V4 1837 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 A0A0U1RQS6 177 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 OR51F1A6NGY5 319 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 EFCAB9A8MZ26 197 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 DFFAO00273 331 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 TSPAN1O60635 241 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 ALX3O95076 343 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 MFN2O95140 757 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 S1PR4O95977 384 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 EGFRP00533 1210 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 SLC4A1P02730 911 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 VTNP04004 478 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 LCKP06239 509 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 CD36P16671 472 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 JUNDP17535 347 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 PAMP19021 973 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 ARSDP51689 593 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 PLIN5Q00G26 463 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 GALK2Q01415 458 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 ZNF404Q494X3 552 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 XKR7Q5GH72 579 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 SNAP47Q5SQN1 464 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 NXNL2Q5VZ03 156 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 RANBP10Q6VN20 620 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 PAQR9Q6ZVX9 377 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 FKBP9P1Q75LS8 142 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 SPATA19Q7Z5L4 167 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 NECAB2Q7Z6G3 386 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 CCDC117Q8IWD4 279 aaPredicted RBP6.71□□□□□ -1.34
VPS39-202ENST00000348544 ARHGAP12Q8IWW6 846 aa6.71□□□□□ -1.34
VPS39-202ENST00000348544 SVOPLQ8N434 492 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms