RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 EFCAB12Q6NXP0 572 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 C2CD4AQ8NCU7 369 aaPredicted RBP13.33□□□□□ -0.28
SKA3-201ENST00000298260 AURKBQ96GD4 344 aaPredicted RBP13.33□□□□□ -0.28
SKA3-201ENST00000298260 FDXACB1Q9BRP7 624 aaPredicted RBP13.33□□□□□ -0.28
SKA3-201ENST00000298260 TRIM54Q9BYV2 358 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 FAM49AQ9H0Q0 323 aaPredicted RBP13.33□□□□□ -0.28
SKA3-201ENST00000298260 RIBC2Q9H4K1 309 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 COQ3Q9NZJ6 369 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 ZNF214Q9UL59 606 aaPredicted RBP13.33□□□□□ -0.28
SKA3-201ENST00000298260 GINS2Q9Y248 185 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 NUP214P35658 2090 aaPredicted RBP13.33□□□□□ -0.28
SKA3-201ENST00000298260 POLR2AP24928 1970 aaKnown RBP13.33□□□□□ -0.28
SKA3-201ENST00000298260 ERI2A8K979 691 aaKnown RBP13.33□□□□□ -0.28
SKA3-201ENST00000298260 RECQL5O94762 991 aaPredicted RBP13.33□□□□□ -0.28
SKA3-201ENST00000298260 MLYCDO95822 493 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 HECTD2Q5U5R9 776 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.33□□□□□ -0.28
SKA3-201ENST00000298260 BPHLQ86WA6 291 aaPredicted RBP13.33□□□□□ -0.28
SKA3-201ENST00000298260 IQCF2Q8IXL9 164 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 LEMD2Q8NC56 503 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 CDHR1Q96JP9 859 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 TBL1YQ9BQ87 522 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 GJD2Q9UKL4 321 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 FAM172BPA6NC97 362 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 PABPN1LA6NDY0 278 aaKnown RBP13.32□□□□□ -0.28
SKA3-201ENST00000298260 AGAP5A6NIR3 686 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 ENPP3O14638 875 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 KMOO15229 486 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 ALX3O95076 343 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 VTNP04004 478 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 RBP1P09455 135 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 IFI30P13284 250 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 ZNF37AP17032 561 aaPredicted RBP13.32□□□□□ -0.28
SKA3-201ENST00000298260 IFNA8P32881 189 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 LIPAP38571 399 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 SLC26A2P50443 739 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 HMGCS2P54868 508 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 P2RX3P56373 397 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 MVKQ03426 396 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 OR4D1Q15615 310 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 ZFP69Q49AA0 526 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 AGAP6Q5VW22 663 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 SVOPQ8N4V2 548 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 ZNF540Q8NDQ6 660 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 OR6P1Q8NGX9 317 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 PPP1R13LQ8WUF5 828 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 CDCA5Q96FF9 252 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 AGAP4Q96P64 663 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 YME1L1Q96TA2 773 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 R3HDMLQ9H3Y0 253 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 NECTIN3Q9NQS3 549 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 POLR3BQ9NW08 1133 aaPredicted RBP13.32□□□□□ -0.28
SKA3-201ENST00000298260 MAP3K20Q9NYL2 800 aaKnown RBP13.32□□□□□ -0.28
SKA3-201ENST00000298260 MARCH4Q9P2E8 410 aaPredicted RBP13.32□□□□□ -0.28
SKA3-201ENST00000298260 KCTD3Q9Y597 815 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 BCKDKO14874 412 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 CRCPO75575 148 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 PRKD3O94806 890 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 DIRAS1O95057 198 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 CYBBP04839 570 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 RAP2AP10114 183 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 ARF4P18085 180 aaPredicted RBP13.32□□□□□ -0.28
SKA3-201ENST00000298260 ATICP31939 592 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 GRK5P34947 590 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 ATP4BP51164 291 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 POLR2JP52435 117 aaKnown RBP13.32□□□□□ -0.28
SKA3-201ENST00000298260 POU4F1Q01851 419 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 STXBP2Q15833 593 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 ZNF404Q494X3 552 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 BCL7AQ4VC05 210 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 FAM98BQ52LJ0 330 aaKnown RBP13.32□□□□□ -0.28
SKA3-201ENST00000298260 TPRG1LQ5T0D9 272 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 AHSA2Q719I0 299 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 FAM20CQ8IXL6 584 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 ELMOD2Q8IZ81 293 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 AGBL3Q8NEM8 1001 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 OR2T11Q8NH01 316 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 EDEM1Q92611 657 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 FYTTD1Q96QD9 318 aaKnown RBP13.32□□□□□ -0.28
SKA3-201ENST00000298260 OR2B2Q9GZK3 357 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 IKZF5Q9H5V7 419 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 VNN3Q9NY84 501 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 OSGIN1Q9UJX0 560 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 MAU2Q9Y6X3 613 aa13.32□□□□□ -0.28
SKA3-201ENST00000298260 IGKV6D-21A0A0A0MT36 114 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 A0A0X1KG70 313 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 UMPSP11172 480 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 ADRA1BP35368 520 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 FKBP1AP62942 108 aaKnown RBP13.31□□□□□ -0.28
SKA3-201ENST00000298260 HERVK_113P63132 956 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 TRAF3Q13114 568 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 RCAN2Q14206 197 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 CRY1Q16526 586 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 ZNF691Q5VV52 312 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 TRAF7Q6Q0C0 670 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 DET1Q7L5Y6 550 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 CDK15Q96Q40 435 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 ERVK-6Q9BXR3 956 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 NSMCE4AQ9NXX6 385 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 TNFSF13BQ9Y275 285 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms