RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 GPR17Q13304 367 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 RAB39AQ14964 217 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 PLCL1Q15111 1095 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 NR6A1Q15406 480 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 OTUD3Q5T2D3 398 aaPredicted RBP18.49■□□□□ 0.55
CPSF3-201ENST00000238112 SFRP1Q8N474 314 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 TERB1Q8NA31 727 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 LINC01599Q8WXQ3 324 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 ISG20Q96AZ6 181 aaKnown RBP18.49■□□□□ 0.55
CPSF3-201ENST00000238112 CDK5RAP1Q96SZ6 601 aaKnown RBP18.49■□□□□ 0.55
CPSF3-201ENST00000238112 ZFC3H1O60293 1989 aaKnown RBP18.48■□□□□ 0.55
CPSF3-201ENST00000238112 CEP350Q5VT06 3117 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 ANKRD66B4E2M5 251 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 H0YAE9 185 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 TULP3O75386 442 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 CLDN11O75508 207 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 MYBPC3Q14896 1274 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 CCNYL2Q5T2Q4 361 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 GPR107Q5VW38 600 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 KCTD8Q6ZWB6 473 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 USP51Q70EK9 711 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 BPIFB1Q8TDL5 484 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 PLGRKTQ9HBL7 147 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.48■□□□□ 0.55
CPSF3-201ENST00000238112 H3BNC9 293 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 GMNNO75496 209 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 ESR1P03372 595 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 G6PDP11413 515 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 CKBP12277 381 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 PTGER3P43115 390 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 MTPNP58546 118 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 ADARB1P78563 741 aaKnown RBP18.48■□□□□ 0.55
CPSF3-201ENST00000238112 ZNF177Q13360 481 aaPredicted RBP18.48■□□□□ 0.55
CPSF3-201ENST00000238112 PYCR3Q53H96 274 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 TMEM214Q6NUQ4 689 aaKnown RBP18.48■□□□□ 0.55
CPSF3-201ENST00000238112 CYP20A1Q6UW02 462 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 LYSMD3Q7Z3D4 306 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 DENND1CQ8IV53 801 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 FAM126BQ8IXS8 530 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 ITFG1Q8TB96 612 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 TSR3Q9UJK0 312 aaKnown RBP18.48■□□□□ 0.55
CPSF3-201ENST00000238112 GABRQQ9UN88 632 aa18.48■□□□□ 0.55
CPSF3-201ENST00000238112 TNPO3Q9Y5L0 923 aaKnown RBP18.48■□□□□ 0.55
CPSF3-201ENST00000238112 GBF1Q92538 1859 aa18.47■□□□□ 0.55
CPSF3-201ENST00000238112 DEAF1O75398 565 aaPredicted RBP18.47■□□□□ 0.55
CPSF3-201ENST00000238112 S100BP04271 92 aaPredicted RBP18.47■□□□□ 0.55
CPSF3-201ENST00000238112 DCKP27707 260 aa18.47■□□□□ 0.55
CPSF3-201ENST00000238112 HTR6P50406 440 aa18.47■□□□□ 0.55
CPSF3-201ENST00000238112 CRHR2Q13324 411 aa18.47■□□□□ 0.55
CPSF3-201ENST00000238112 TBC1D25Q3MII6 688 aa18.47■□□□□ 0.55
CPSF3-201ENST00000238112 FAM98BQ52LJ0 330 aaKnown RBP18.47■□□□□ 0.55
CPSF3-201ENST00000238112 TBPL2Q6SJ96 375 aa18.47■□□□□ 0.55
CPSF3-201ENST00000238112 DLEU7Q6UYE1 221 aa18.47■□□□□ 0.55
CPSF3-201ENST00000238112 EGFL6Q8IUX8 553 aa18.47■□□□□ 0.55
CPSF3-201ENST00000238112 HBEGFQ99075 208 aa18.47■□□□□ 0.55
CPSF3-201ENST00000238112 CGREF1Q99674 301 aa18.47■□□□□ 0.55
CPSF3-201ENST00000238112 CDH7Q9ULB5 785 aa18.47■□□□□ 0.55
CPSF3-201ENST00000238112 ILVBLA1L0T0 632 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 SLC38A8A6NNN8 435 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 IQCF5A8MTL0 148 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 IFRD1O00458 451 aaPredicted RBP18.46■□□□□ 0.55
CPSF3-201ENST00000238112 ATE1O95260 518 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 YAP1P46937 504 aaKnown RBP18.46■□□□□ 0.55
CPSF3-201ENST00000238112 ENTPD1P49961 510 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 FAM189BP81408 668 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 CRY1Q16526 586 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 KLHL35Q6PF15 583 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 GOLGA7Q7Z5G4 137 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 RIMKLAQ8IXN7 391 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 ABI1Q8IZP0 508 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 STK40Q8N2I9 435 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 DTWD1Q8N5C7 304 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 PNPT1Q8TCS8 783 aaKnown RBP18.46■□□□□ 0.55
CPSF3-201ENST00000238112 MIPOL1Q8TD10 442 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 ABTB1Q969K4 478 aaPredicted RBP18.46■□□□□ 0.55
CPSF3-201ENST00000238112 THAP11Q96EK4 314 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 RHBDL2Q9NX52 303 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 POLR3HQ9Y535 204 aaPredicted RBP18.46■□□□□ 0.55
CPSF3-201ENST00000238112 H3BMQ9 156 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 ARNTLO00327 626 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 LSM1O15116 133 aaKnown RBP18.46■□□□□ 0.55
CPSF3-201ENST00000238112 NOL3O60936 208 aaKnown RBP18.46■□□□□ 0.55
CPSF3-201ENST00000238112 VNN2O95498 520 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 ANXA6P08133 673 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 RAP2AP10114 183 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 EEF1B2P24534 225 aaKnown RBP18.46■□□□□ 0.55
CPSF3-201ENST00000238112 NFKBIAP25963 317 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 HLCSP50747 726 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 ARSFP54793 590 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 SELPLGQ14242 412 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 NEDD8Q15843 81 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 AP5B1Q2VPB7 878 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 CCSAPQ6IQ19 270 aaPredicted RBP18.46■□□□□ 0.55
CPSF3-201ENST00000238112 RSPO2Q6UXX9 243 aaPredicted RBP18.46■□□□□ 0.55
CPSF3-201ENST00000238112 PCSK9Q8NBP7 692 aaKnown RBP18.46■□□□□ 0.55
CPSF3-201ENST00000238112 HSPBAP1Q96EW2 488 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 COG8Q96MW5 612 aa18.46■□□□□ 0.55
CPSF3-201ENST00000238112 IFT80Q9P2H3 777 aaPredicted RBP18.46■□□□□ 0.55
CPSF3-201ENST00000238112 GREB1Q4ZG55 1949 aa18.46■□□□□ 0.54
CPSF3-201ENST00000238112 GOLGA8CPA6NN73 597 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms