RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 TOP3BO95985 862 aaKnown RBP13.6□□□□□ -0.23
SIX4-201ENST00000216513 PIK3R1P27986 724 aa13.6□□□□□ -0.23
SIX4-201ENST00000216513 PSMB9P28065 219 aa13.6□□□□□ -0.23
SIX4-201ENST00000216513 RPP38P78345 283 aaKnown RBP13.6□□□□□ -0.23
SIX4-201ENST00000216513 SLC10A7Q0GE19 358 aa13.6□□□□□ -0.23
SIX4-201ENST00000216513 NOMO1Q15155 1222 aa13.6□□□□□ -0.23
SIX4-201ENST00000216513 PRAMEF14Q5SWL7 426 aa13.6□□□□□ -0.23
SIX4-201ENST00000216513 BROXQ5VW32 411 aa13.6□□□□□ -0.23
SIX4-201ENST00000216513 LRRC66Q68CR7 880 aa13.6□□□□□ -0.23
SIX4-201ENST00000216513 CYP4Z2PQ8N1L4 340 aa13.6□□□□□ -0.23
SIX4-201ENST00000216513 PHC3Q8NDX5 983 aa13.6□□□□□ -0.23
SIX4-201ENST00000216513 TMEM125Q96AQ2 219 aa13.6□□□□□ -0.23
SIX4-201ENST00000216513 EIF2B4Q9UI10 523 aaKnown RBP13.6□□□□□ -0.23
SIX4-201ENST00000216513 STON1Q9Y6Q2 735 aa13.6□□□□□ -0.23
SIX4-201ENST00000216513 DEAF1O75398 565 aaPredicted RBP13.59□□□□□ -0.23
SIX4-201ENST00000216513 CST5P28325 142 aaPredicted RBP13.59□□□□□ -0.23
SIX4-201ENST00000216513 PNPT1Q8TCS8 783 aaKnown RBP13.59□□□□□ -0.23
SIX4-201ENST00000216513 ADAMTS15Q8TE58 950 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 BAP1Q92560 729 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 OXNAD1Q96HP4 312 aaPredicted RBP13.59□□□□□ -0.23
SIX4-201ENST00000216513 ZNF514Q96K75 400 aaPredicted RBP13.59□□□□□ -0.23
SIX4-201ENST00000216513 LINC00597Q9H2U6 94 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 SLCO1B3Q9NPD5 702 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 ANAPC2Q9UJX6 822 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 ANGPT4Q9Y264 503 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 ZNF840PA6NDX5 716 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 MID1O15344 667 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 CPN2P22792 545 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 MTAPQ13126 283 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 TDGQ13569 410 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 CCDC103Q8IW40 242 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 SLC43A3Q8NBI5 491 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 OR5M3Q8NGP4 307 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 MTERF3Q96E29 417 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 RAB11FIP5Q9BXF6 653 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 KLHL1Q9NR64 748 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 GDE1Q9NZC3 331 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 PLAGL1Q9UM63 463 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 LINC01553A4QN01 128 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 ZBTB11O95625 1053 aaPredicted RBP13.59□□□□□ -0.23
SIX4-201ENST00000216513 ZNF37AP17032 561 aaPredicted RBP13.59□□□□□ -0.23
SIX4-201ENST00000216513 GPD2P43304 727 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 CASP9P55211 416 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 PER3P56645 1201 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 ERVFC1P60507 584 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 CSTF3Q12996 717 aaKnown RBP13.59□□□□□ -0.23
SIX4-201ENST00000216513 SLC35G1Q2M3R5 365 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 DNASE1L2Q92874 299 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 FAM83CQ9BQN1 747 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 A0A0D9SEW6 157 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 UBXN7O94888 489 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 POLR2CP19387 275 aaPredicted RBP13.59□□□□□ -0.23
SIX4-201ENST00000216513 NAGLUP54802 743 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 CST6Q15828 149 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 LSM12Q3MHD2 195 aaKnown RBP13.59□□□□□ -0.23
SIX4-201ENST00000216513 SLC39A4Q6P5W5 647 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 OR8H2Q8N162 312 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 APOPT1Q96IL0 206 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 QKIQ96PU8 341 aaKnown RBP eCLIP13.59□□□□□ -0.23
SIX4-201ENST00000216513 HBEGFQ99075 208 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 DGCR6LQ9BY27 220 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 KCNN2Q9H2S1 579 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 PNPLA8Q9NP80 782 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 VPS4AQ9UN37 437 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 RGPD1P0DJD0 1748 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 CNTN5O94779 1100 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 EFNA1P20827 205 aaPredicted RBP13.59□□□□□ -0.23
SIX4-201ENST00000216513 RPL3P39023 403 aaKnown RBP13.59□□□□□ -0.23
SIX4-201ENST00000216513 ATP1A4Q13733 1029 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 TXNDC11Q6PKC3 985 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 RABEPKQ7Z6M1 372 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 TMEM25Q86YD3 366 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 TCAIMQ8N3R3 496 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 MRPL48Q96GC5 212 aaKnown RBP13.59□□□□□ -0.23
SIX4-201ENST00000216513 PRRG3Q9BZD7 231 aa13.59□□□□□ -0.23
SIX4-201ENST00000216513 ADAMTS4O75173 837 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 DGCR6Q14129 220 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 CHRNA6Q15825 494 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 MACC1Q6ZN28 852 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 BHLHE22Q8NFJ8 381 aaPredicted RBP13.58□□□□□ -0.24
SIX4-201ENST00000216513 SEMA3GQ9NS98 782 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 LYVE1Q9Y5Y7 322 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 CCNA2P20248 432 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 CHRNA4P43681 627 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 DYNC1I2Q13409 638 aaKnown RBP13.58□□□□□ -0.24
SIX4-201ENST00000216513 MED27Q6P2C8 311 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 FGD2Q7Z6J4 655 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 UHRF1Q96T88 793 aaPredicted RBP13.58□□□□□ -0.24
SIX4-201ENST00000216513 GRIP2Q9C0E4 1043 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 IGLON5A6NGN9 336 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 LRPAP1P30533 357 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 HSPA7P48741 367 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 CDH13P55290 713 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 ZNF460Q14592 562 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 WDR93Q6P2C0 686 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 TMEFF1Q8IYR6 380 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 WDR92Q96MX6 357 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 TTYH3Q9C0H2 523 aa13.58□□□□□ -0.24
SIX4-201ENST00000216513 NFKBIL1Q9UBC1 381 aaPredicted RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms