RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 PCDHGB2Q9Y5G2 931 aa6.08□□□□□ -1.44
SCN1A-217ENST00000637988 CROCCQ5TZA2 2017 aa6.08□□□□□ -1.44
SCN1A-217ENST00000637988 COL5A2P05997 1499 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-217ENST00000637988 FFAR2O15552 330 aa6.08□□□□□ -1.44
SCN1A-217ENST00000637988 TREHO43280 583 aa6.08□□□□□ -1.44
SCN1A-217ENST00000637988 ZNF217O75362 1048 aa6.08□□□□□ -1.44
SCN1A-217ENST00000637988 PAPSS2O95340 614 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-217ENST00000637988 DBIP07108 87 aaKnown RBP6.08□□□□□ -1.44
SCN1A-217ENST00000637988 DBTP11182 482 aaKnown RBP6.08□□□□□ -1.44
SCN1A-217ENST00000637988 CDK18Q07002 472 aa6.08□□□□□ -1.44
SCN1A-217ENST00000637988 GRB10Q13322 594 aa6.08□□□□□ -1.44
SCN1A-217ENST00000637988 APOBEC3HQ6NTF7 200 aaKnown RBP6.08□□□□□ -1.44
SCN1A-217ENST00000637988 FTMTQ8N4E7 242 aa6.08□□□□□ -1.44
SCN1A-217ENST00000637988 COQ8BQ96D53 544 aa6.08□□□□□ -1.44
SCN1A-217ENST00000637988 MFSD14AQ96MC6 490 aa6.08□□□□□ -1.44
SCN1A-217ENST00000637988 OR52E6Q96RD3 313 aa6.08□□□□□ -1.44
SCN1A-217ENST00000637988 LGMNQ99538 433 aa6.08□□□□□ -1.44
SCN1A-217ENST00000637988 DCUN1D5Q9BTE7 237 aa6.08□□□□□ -1.44
SCN1A-217ENST00000637988 PCDHGB7Q9Y5F8 929 aa6.08□□□□□ -1.44
SCN1A-217ENST00000637988 RAI2Q9Y5P3 530 aa6.08□□□□□ -1.44
SCN1A-217ENST00000637988 KIDINS220Q9ULH0 1771 aa6.08□□□□□ -1.44
SCN1A-217ENST00000637988 MROH2AA6NES4 1674 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 SLC38A8A6NNN8 435 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 NPIPA5E9PKD4 350 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 AGPSO00116 658 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 DLX3O60479 287 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 PPP1R37O75864 691 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CD2P06729 351 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 IDO1P14902 403 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CD247P20963 164 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 SDHBP21912 280 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CPN2P22792 545 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CD40LGP29965 261 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 KHKP50053 298 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 ERFP50548 548 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 PPP2R2BQ00005 443 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 SPIRE1Q08AE8 756 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 MAPK11Q15759 364 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 ZBTB6Q15916 424 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 SLC25A52Q3SY17 297 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 GTF2IRD2BQ6EKJ0 949 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 WDR59Q6PJI9 974 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 GTF2IRD2Q86UP8 949 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 TMEM151BQ8IW70 566 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 ZMIZ2Q8NF64 920 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 STYXQ8WUJ0 223 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 RAD9AQ99638 391 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 NGBQ9NPG2 151 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 HEY2Q9UBP5 337 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 LEF1Q9UJU2 399 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 HCN2Q9UL51 889 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 NPIPA1Q9UND3 350 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 MRPL42Q9Y6G3 142 aaKnown RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 TCRBV21S2A2A0A5A6 115 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 ELOA3DA6NLF2 546 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CLDN5O00501 218 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 TNFSF4P23510 183 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 IDH2P48735 452 aaKnown RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 TMED10P49755 219 aaKnown RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 RAB10P61026 200 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 RPL38P63173 70 aaKnown RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 TLE2Q04725 743 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 TLR1Q15399 786 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 DGUOKQ16854 277 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 SWI5Q1ZZU3 235 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 ITPRIPL2Q3MIP1 535 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 ELOA3BQ3SY89 546 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 DEFB119Q8N690 84 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 ELOA3Q8NG57 546 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 GATAD2BQ8WXI9 593 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 KLHL32Q96NJ5 620 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 GRIP2Q9C0E4 1043 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 ZFP37Q9Y6Q3 630 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 GJE1A6NN92 205 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 ZNF879B4DU55 563 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 WNT9AO14904 365 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 MT-CYBP00156 380 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 HOXB9P17482 250 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 DSG2Q14126 1118 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 FOXR2Q6PJQ5 311 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 C3orf67Q6ZVT6 689 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 MAP4K3Q8IVH8 894 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 MRPL41Q8IXM3 137 aaKnown RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 UBASH3BQ8TF42 649 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 PPP1R14BQ96C90 147 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 KLRG1Q96E93 195 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 B3GALT6Q96L58 329 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 FAM83CQ9BQN1 747 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 ZNF670Q9BS34 389 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 AGO3Q9H9G7 860 aaKnown RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 PLGRKTQ9HBL7 147 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 RXFP1Q9HBX9 757 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CRNNQ9UBG3 495 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-217ENST00000637988 FAM172BPA6NC97 362 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 SNAP91O60641 907 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 SLITRK3O94933 977 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 IL7RP16871 459 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 AP3S2P59780 193 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 CHAF1BQ13112 559 aa6.07□□□□□ -1.44
SCN1A-217ENST00000637988 DNAJC3Q13217 504 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms