RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 GPR156Q8NFN8 814 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 ZDHHC1Q8WTX9 485 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 LRRC1Q9BTT6 524 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 KIFC1Q9BW19 673 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 BFARQ9NZS9 450 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 FEZ2Q9UHY8 353 aaPredicted RBP13.28□□□□□ -0.28
LINC00540-202ENST00000616974 APPL1Q9UKG1 709 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 CFAP20Q9Y6A4 193 aaKnown RBP13.28□□□□□ -0.28
LINC00540-202ENST00000616974 URB1O60287 2271 aaKnown RBP13.28□□□□□ -0.28
LINC00540-202ENST00000616974 ZCWPW2A0A1B0GU75 182 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 EFCAB8A8MWE9 144 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 CCDC188H7C350 402 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 PPM1DO15297 605 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 PYGLP06737 847 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 CKMT2P17540 419 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 HADHAP40939 763 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 ARCN1P48444 511 aaKnown RBP13.28□□□□□ -0.28
LINC00540-202ENST00000616974 ITGA9Q13797 1035 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 INSCQ1MX18 579 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 UBAP2Q5T6F2 1119 aaKnown RBP13.28□□□□□ -0.28
LINC00540-202ENST00000616974 HIBCHQ6NVY1 386 aaPredicted RBP13.28□□□□□ -0.28
LINC00540-202ENST00000616974 FSTL5Q8N475 847 aaPredicted RBP13.28□□□□□ -0.28
LINC00540-202ENST00000616974 PPHLN1Q8NEY8 458 aaKnown RBP13.28□□□□□ -0.28
LINC00540-202ENST00000616974 IFI44Q8TCB0 444 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 IL22Q9GZX6 179 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 GRHL1Q9NZI5 618 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 SOX13Q9UN79 622 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 SLC30A1Q9Y6M5 507 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 RNF215Q9Y6U7 377 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 PMS2P1A4D2B8 440 aa13.27□□□□□ -0.28
LINC00540-202ENST00000616974 ZNF7P17097 686 aaPredicted RBP13.27□□□□□ -0.28
LINC00540-202ENST00000616974 ITGB6P18564 788 aa13.27□□□□□ -0.28
LINC00540-202ENST00000616974 ITGALP20701 1170 aa13.27□□□□□ -0.28
LINC00540-202ENST00000616974 HLTFQ14527 1009 aaKnown RBP eCLIP13.27□□□□□ -0.28
LINC00540-202ENST00000616974 SKIDA1Q1XH10 827 aa13.27□□□□□ -0.28
LINC00540-202ENST00000616974 DUS1LQ6P1R4 473 aaKnown RBP13.27□□□□□ -0.28
LINC00540-202ENST00000616974 C4orf22Q6V702 233 aa13.27□□□□□ -0.28
LINC00540-202ENST00000616974 EFL1Q7Z2Z2 1120 aaKnown RBP13.27□□□□□ -0.28
LINC00540-202ENST00000616974 ZNF572Q7Z3I7 529 aaPredicted RBP13.27□□□□□ -0.28
LINC00540-202ENST00000616974 LRRTM4Q86VH4 590 aa13.27□□□□□ -0.28
LINC00540-202ENST00000616974 GKN2Q86XP6 184 aa13.27□□□□□ -0.28
LINC00540-202ENST00000616974 Q8N9G6 341 aaPredicted RBP13.27□□□□□ -0.28
LINC00540-202ENST00000616974 FAM181AQ8N9Y4 354 aa13.27□□□□□ -0.28
LINC00540-202ENST00000616974 MCUQ8NE86 351 aa13.27□□□□□ -0.28
LINC00540-202ENST00000616974 OR4L1Q8NH43 312 aa13.27□□□□□ -0.28
LINC00540-202ENST00000616974 SLC37A2Q8TED4 501 aa13.27□□□□□ -0.28
LINC00540-202ENST00000616974 JPH3Q8WXH2 748 aaPredicted RBP13.27□□□□□ -0.28
LINC00540-202ENST00000616974 CCDC74AQ96AQ1 378 aa13.27□□□□□ -0.28
LINC00540-202ENST00000616974 ZNF669Q96BR6 464 aaPredicted RBP13.27□□□□□ -0.28
LINC00540-202ENST00000616974 FAM136AQ96C01 138 aa13.27□□□□□ -0.28
LINC00540-202ENST00000616974 RAD18Q9NS91 495 aa13.27□□□□□ -0.28
LINC00540-202ENST00000616974 RNF14Q9UBS8 474 aa13.27□□□□□ -0.28
LINC00540-202ENST00000616974 MAD1L1Q9Y6D9 718 aa13.27□□□□□ -0.28
LINC00540-202ENST00000616974 IGLV3-16A0A075B6K0 115 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 EME2A4GXA9 379 aaPredicted RBP13.27□□□□□ -0.29
LINC00540-202ENST00000616974 TPP1O14773 563 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 POP7O75817 140 aaKnown RBP13.27□□□□□ -0.29
LINC00540-202ENST00000616974 ADRB1P08588 477 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 MSH3P20585 1137 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 SDHBP21912 280 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 ACP1P24666 158 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 PGGT1BP53609 377 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 CDK16Q00536 496 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 PDE1BQ01064 536 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 CACNG1Q06432 222 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 CLCA4Q14CN2 919 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 BBS9Q3SYG4 887 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 LDLRAP1Q5SW96 308 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 ANKMY2Q8IV38 441 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 DENND6AQ8IWF6 608 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 ARL10Q8N8L6 244 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 DTX3LQ8TDB6 740 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 TTC25Q96NG3 672 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 SCNM1Q9BWG6 230 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 DMGDHQ9UI17 866 aaKnown RBP13.27□□□□□ -0.29
LINC00540-202ENST00000616974 ATXN7L1Q9ULK2 861 aaPredicted RBP13.27□□□□□ -0.29
LINC00540-202ENST00000616974 PADI4Q9UM07 663 aa13.27□□□□□ -0.29
LINC00540-202ENST00000616974 CHD6Q8TD26 2715 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 A0A1W2PQM1 296 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 SEC16AO15027 2179 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 VEGFDO43915 354 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 PDHA2P29803 388 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 ABCG1P45844 678 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 NPY2RP49146 381 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 PRAMEP78395 509 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 INSM1Q01101 510 aaPredicted RBP13.26□□□□□ -0.29
LINC00540-202ENST00000616974 BRD3Q15059 726 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 ANKRD20A4Q4UJ75 823 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 ZNF658BQ4V348 819 aaPredicted RBP13.26□□□□□ -0.29
LINC00540-202ENST00000616974 NKAIN2Q5VXU1 208 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 ZDHHC20Q5W0Z9 365 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 OGFOD3Q6PK18 319 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 SDR16C5Q8N3Y7 309 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 ARL14Q8N4G2 192 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 LRRC45Q96CN5 670 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 COPS8Q99627 209 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 CDC6Q99741 560 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 DUSP23Q9BVJ7 150 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 GSDMCQ9BYG8 508 aa13.26□□□□□ -0.29
LINC00540-202ENST00000616974 RDH14Q9HBH5 336 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms