RNA–Protein interactions for RNA: ENST00000611614.4

COPS7B-223, Transcript of COP9 signalosome subunit 7B, human

TSL 3 BASIC

Gene COPS7B, Length 2,468 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPS7B-223	ENST00000611614	FGF13	Q92913	245 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	SMARCD2	Q92925	531 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	ALG14	Q96F25	216 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	TFB2M	Q9H5Q4	396 aa	Known RBP	13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	GDE1	Q9NZC3	331 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	SUCO	Q9UBS9	1254 aa	Known RBP	13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	PAPLN	O95428	1278 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	PYGL	P06737	847 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	C8B	P07358	591 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	TSPAN8	P19075	237 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	CD70	P32970	193 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	MSX2	P35548	267 aa	Predicted RBP	13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	ATP4B	P51164	291 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	ZNF140	P52738	457 aa	Predicted RBP	13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	TXNL4A	P83876	142 aa	Known RBP	13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	OR4D1	Q15615	310 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	TCEAL5	Q5H9L2	206 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	IRAK1BP1	Q5VVH5	260 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	CES5A	Q6NT32	575 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	TMEM184A	Q6ZMB5	413 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	LARP4	Q71RC2	724 aa	Known RBP eCLIP	13.74	□□□□□ -0.21	1e-9	■■□□□ 13.9
COPS7B-223	ENST00000611614	NPAS3	Q8IXF0	933 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	RNF148	Q8N7C7	305 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	KIAA1958	Q8N8K9	716 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	PTGR2	Q8N8N7	351 aa	Predicted RBP	13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	RIN3	Q8TB24	985 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	EXT2	Q93063	718 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	RMDN1	Q96DB5	314 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	PRPF18	Q99633	342 aa	Known RBP	13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	OSBPL11	Q9BXB4	747 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	GALNT8	Q9NY28	637 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	CLEC4E	Q9ULY5	219 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	PCDHGA7	Q9Y5G6	932 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	SPO11	Q9Y5K1	396 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	CHD5	Q8TDI0	1954 aa		13.74	□□□□□ -0.21
COPS7B-223	ENST00000611614	ADH1C	P00326	375 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	SNRPB2	P08579	225 aa	Known RBP	13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	RGR	P47804	291 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	HYAL1	Q12794	435 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	DCTN2	Q13561	401 aa	Known RBP	13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	LRP8	Q14114	963 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	MYBPC3	Q14896	1274 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	UGT3A2	Q3SY77	523 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	ATAT1	Q5SQI0	421 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	REP15	Q6BDI9	236 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	AFTPH	Q6ULP2	937 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	CYHR1	Q6ZMK1	362 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	CHERP	Q8IWX8	916 aa	Known RBP	13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	BPIFB1	Q8TDL5	484 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	ASB9	Q96DX5	294 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	NSMCE3	Q96MG7	304 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	ADGRE3	Q9BY15	652 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	SYTL2	Q9HCH5	934 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	PREB	Q9HCU5	417 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	THG1L	Q9NWX6	298 aa	Known RBP	13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	CACNA2D2	Q9NY47	1150 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	ADA2	Q9NZK5	511 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	SLC25A13	Q9UJS0	675 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	APPL1	Q9UKG1	709 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	SARDH	Q9UL12	918 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	FCF1	Q9Y324	198 aa	Known RBP	13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	AK5	Q9Y6K8	562 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	FBP2	O00757	339 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	ATP6V1B1	P15313	513 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	ZNF23	P17027	643 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	CR2	P20023	1033 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	HLA-F	P30511	346 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	TRAP1	Q12931	704 aa	Known RBP	13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	TAF1A	Q15573	450 aa	Predicted RBP	13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	PITRM1	Q5JRX3	1037 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	FAM78A	Q5JUQ0	283 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	C6orf52	Q5T4I8	152 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	ANKRD54	Q6NXT1	300 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	IYD	Q6PHW0	289 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	PCDH20	Q8N6Y1	951 aa	Known RBP	13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	C19orf60	Q96EN9	201 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	DUS3L	Q96G46	650 aa	Known RBP	13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	ZNF597	Q96LX8	424 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	ATOH8	Q96SQ7	321 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	SLC25A23	Q9BV35	468 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	CHCHD3	Q9NX63	227 aa	Known RBP	13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	CCDC167	Q9P0B6	97 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	BPTF	Q12830	3046 aa		13.73	□□□□□ -0.21
COPS7B-223	ENST00000611614	CXorf51A	A0A1B0GTR3	108 aa		13.72	□□□□□ -0.21
COPS7B-223	ENST00000611614		H3BMM5	538 aa		13.72	□□□□□ -0.21
COPS7B-223	ENST00000611614	UBXN8	O00124	270 aa		13.72	□□□□□ -0.21
COPS7B-223	ENST00000611614	TRMU	O75648	421 aa	Known RBP	13.72	□□□□□ -0.21
COPS7B-223	ENST00000611614	RHOBTB1	O94844	696 aa		13.72	□□□□□ -0.21
COPS7B-223	ENST00000611614	FGF4	P08620	206 aa		13.72	□□□□□ -0.21
COPS7B-223	ENST00000611614	PRSS56	P0CW18	603 aa		13.72	□□□□□ -0.21
COPS7B-223	ENST00000611614	PABPC1	P11940	636 aa	Known RBP	13.72	□□□□□ -0.21
COPS7B-223	ENST00000611614	MTHFD2	P13995	350 aa		13.72	□□□□□ -0.21
COPS7B-223	ENST00000611614	PSMA3	P25788	255 aa		13.72	□□□□□ -0.21
COPS7B-223	ENST00000611614	VIPR2	P41587	438 aa		13.72	□□□□□ -0.21
COPS7B-223	ENST00000611614	MAPK8	P45983	427 aa		13.72	□□□□□ -0.21
COPS7B-223	ENST00000611614	CDH13	P55290	713 aa		13.72	□□□□□ -0.21
COPS7B-223	ENST00000611614	TUBA4A	P68366	448 aa		13.72	□□□□□ -0.21
COPS7B-223	ENST00000611614	SH3BP2	P78314	561 aa		13.72	□□□□□ -0.21
COPS7B-223	ENST00000611614	CDKL1	Q00532	357 aa		13.72	□□□□□ -0.21
COPS7B-223	ENST00000611614	DMC1	Q14565	340 aa		13.72	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms