RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	NFKB1	P19838	968 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	NR1D1	P20393	614 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	IDS	P22304	550 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	CA5A	P35218	305 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	DLST	P36957	453 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	ARHGAP25	P42331	645 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	CAPZB	P47756	277 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	WNT3A	P56704	352 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	WASHC5	Q12768	1159 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	TMEM115	Q12893	351 aa	Predicted RBP	10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	MAP7	Q14244	749 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	CHRNA6	Q15825	494 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	IGFBP7	Q16270	282 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	ODF2	Q5BJF6	829 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	SIRPB2	Q5JXA9	342 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	LRRC38	Q5VT99	294 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	AGAP9	Q5VTM2	703 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	CACHD1	Q5VU97	1274 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	KAZN	Q674X7	775 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	CCDC70	Q6NSX1	233 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	IRGC	Q6NXR0	463 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	KDELC1	Q6UW63	502 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	C6orf15	Q6UXA7	325 aa	Predicted RBP	10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	FAM151B	Q6UXP7	276 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	VSIG1	Q86XK7	387 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	RASGRP3	Q8IV61	690 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	TTC30B	Q8N4P2	665 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	SLC25A41	Q8N5S1	370 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	GPR150	Q8NGU9	434 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	CXorf40B	Q96DE9	158 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	STAMBPL1	Q96FJ0	436 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	ABHD17A	Q96GS6	310 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	TEKT5	Q96M29	485 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	VPS35	Q96QK1	796 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	IL26	Q9NPH9	171 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	ABHD10	Q9NUJ1	306 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	ZNHIT6	Q9NWK9	470 aa	Known RBP	10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	LNPEP	Q9UIQ6	1025 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	PTPN13	Q12923	2485 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776		K7EM74	188 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	BUD23	O43709	281 aa	Known RBP	10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	UGT1A9	O60656	530 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	MFAP3L	O75121	409 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	KATNA1	O75449	491 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	TIAF1	O95411	115 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	UGT1A6	P19224	532 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	COMT	P21964	271 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	UGT1A1	P22309	533 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	UGT1A4	P22310	534 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	PBLD	P30039	288 aa	Predicted RBP	10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	CASR	P41180	1078 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	CDKN2B	P42772	138 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	CTSC	P53634	463 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	MC1R	Q01726	317 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	ADCY2	Q08462	1091 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	GTF2H3	Q13889	308 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	TRIM14	Q14142	442 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	ERV3-1	Q14264	604 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	IL11RA	Q14626	422 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	KCNAB1	Q14722	419 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	LACTB2	Q53H82	288 aa	Predicted RBP	10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	WASH2P	Q6VEQ5	465 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	PRSS42	Q7Z5A4	293 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	TMEM135	Q86UB9	458 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	RHOT2	Q8IXI1	618 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	RHOT1	Q8IXI2	618 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	RASGEF1A	Q8N9B8	481 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	TFB1M	Q8WVM0	346 aa	Known RBP	10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	KLHL6	Q8WZ60	621 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	HAUS1	Q96CS2	278 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	OXNAD1	Q96HP4	312 aa	Predicted RBP	10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	CCDC42	Q96M95	316 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	GOLPH3	Q9H4A6	298 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	UGT1A7	Q9HAW7	530 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	UGT1A10	Q9HAW8	530 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	UGT1A8	Q9HAW9	530 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	WASH6P	Q9NQA3	447 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	DDX56	Q9NY93	547 aa	Known RBP	10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	FAM153A	Q9UHL3	310 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	PSMD13	Q9UNM6	376 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	TP53TG5	Q9Y2B4	290 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	KCNMB2	Q9Y691	235 aa		10.33	□□□□□ -0.76
LSM4-205	ENST00000597776	IGHV5-51	A0A0C4DH38	117 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	LOC285095	A0A1B0GVY8	99 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	GAPDHS	O14556	408 aa	Predicted RBP	10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	TOX3	O15405	576 aa	Predicted RBP	10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	SPOP	O43791	374 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	CST8	O60676	142 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	SPAG6	O75602	509 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	POP7	O75817	140 aa	Known RBP	10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	FGF5	P12034	268 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	VCL	P18206	1134 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	HMGCL	P35914	325 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	SPAM1	P38567	509 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	HAL	P42357	657 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	FOXK1	P85037	733 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	SEPT6	Q14141	434 aa		10.32	□□□□□ -0.76
LSM4-205	ENST00000597776	PTPRCAP	Q14761	206 aa		10.32	□□□□□ -0.76

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