RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 FAF1Q9UNN5 650 aaPredicted RBP4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 CTAGE9A4FU28 777 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 TMEM8BA6NDV4 472 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 B4DLN1 442 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 TMEM189-UBE2V1I3L0A0 370 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 BUD23O43709 281 aaKnown RBP4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 TSPAN9O75954 239 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 GH2P01242 217 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 CTAGE8P0CG41 777 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 ZNF23P17027 643 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 GM2AP17900 193 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 ALOX12P18054 663 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 AHRP35869 848 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 CASP2P42575 452 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 MRPL12P52815 198 aaKnown RBP4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 MLLT10P55197 1068 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 UBE2V1Q13404 147 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 KCNC3Q14003 757 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 WTAPQ15007 396 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 RBBP5Q15291 538 aaKnown RBP4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 DLG2Q15700 870 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 MEA1Q16626 185 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 RILPL1Q5EBL4 403 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 SIRPB2Q5JXA9 342 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 PLEKHS1Q5SXH7 462 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 STPG1Q5TH74 334 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 SMIM29Q86T20 159 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 CTAGE4Q8IX94 777 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 GBGT1Q8N5D6 347 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 C1orf52Q8N6N3 182 aaKnown RBP4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 RDM1Q8NG50 284 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 CCDC34Q96HJ3 373 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 DDOQ99489 341 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 TRMT61BQ9BVS5 477 aaKnown RBP4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 ZFP57Q9NU63 452 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 TRMT1Q9NXH9 659 aaKnown RBP4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 RCC2Q9P258 522 aaKnown RBP4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 SUCLA2Q9P2R7 463 aaPredicted RBP4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 ADD3Q9UEY8 706 aaKnown RBP4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 TSPYL4Q9UJ04 414 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 ZNF112Q9UJU3 913 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 GPR34Q9UPC5 381 aa4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 EXO1Q9UQ84 846 aaKnown RBP4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.36□□□□□ -1.71
SMCHD1-204ENST00000581226 A0A1W2PQ09 198 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 LRRC72A6NJI9 287 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 SYNGR3O43761 229 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 FGF17O60258 216 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 MITFO75030 526 aaPredicted RBP4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 GFPT2O94808 682 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 MARK3P27448 753 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 GCH1P30793 250 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 HOXA1P49639 335 aaPredicted RBP4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 RPL24P83731 157 aaKnown RBP4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 CHAF1BQ13112 559 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 ACVR2BQ13705 512 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 C9orf50Q5SZB4 431 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 ZNF534Q76KX8 674 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 FASTKD5Q7L8L6 764 aaKnown RBP4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 NFE4Q86UQ8 179 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 CIARTQ8N365 385 aaPredicted RBP4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 NSUN4Q96CB9 384 aaKnown RBP4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 OXNAD1Q96HP4 312 aaPredicted RBP4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 MMP28Q9H239 520 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 SEMA6AQ9H2E6 1030 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 TRPC7Q9HCX4 862 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 MAP3K20Q9NYL2 800 aaKnown RBP4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 TAAR2Q9P1P5 351 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 YIPF1Q9Y548 306 aa4.35□□□□□ -1.71
SMCHD1-204ENST00000581226 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 A0A1W2PR77 199 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 hCG_1807616A0A1W2PRN6 198 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 OR2M5A3KFT3 312 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 FAM172BPA6NC97 362 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 C15orf62A8K5M9 175 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 P2RY10O00398 339 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 PLK4O00444 970 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 CTDSP2O14595 271 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 RSL1D1O76021 490 aaKnown RBP4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 WISP2O76076 250 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 BMP10O95393 424 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 UMODP07911 640 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 KRT19P08727 400 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 CSH1P0DML2 217 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 CSH2P0DML3 217 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 MMP9P14780 707 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 SLC15A1P46059 708 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 SUOXP51687 545 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 SNX16P57768 344 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 GAGE5Q13069 117 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 GAGE6Q13070 117 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 CUL4AQ13619 759 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 RAB6CQ53S08 254 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 SPATA1Q5VX52 437 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 PLXDC2Q6UX71 529 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 SLC26A9Q7LBE3 791 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 GALNT13Q8IUC8 556 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 MCEMP1Q8IX19 187 aa4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 RBM15BQ8NDT2 890 aaKnown RBP4.34□□□□□ -1.71
SMCHD1-204ENST00000581226 SLC24A4Q8NFF2 622 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms