RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TEX44Q53QW1 395 aa20.69■□□□□ 0.9
VPS53-216ENST00000574029 CACHD1Q5VU97 1274 aa20.69■□□□□ 0.9
VPS53-216ENST00000574029 CCDC70Q6NSX1 233 aa20.69■□□□□ 0.9
VPS53-216ENST00000574029 SLC35G2Q8TBE7 412 aa20.69■□□□□ 0.9
VPS53-216ENST00000574029 CXorf40BQ96DE9 158 aa20.69■□□□□ 0.9
VPS53-216ENST00000574029 ZDHHC12Q96GR4 267 aa20.69■□□□□ 0.9
VPS53-216ENST00000574029 ELMO2Q96JJ3 720 aa20.69■□□□□ 0.9
VPS53-216ENST00000574029 KCND3Q9UK17 655 aa20.69■□□□□ 0.9
VPS53-216ENST00000574029 TP53TG5Q9Y2B4 290 aa20.69■□□□□ 0.9
VPS53-216ENST00000574029 WDR37Q9Y2I8 494 aa20.69■□□□□ 0.9
VPS53-216ENST00000574029 PCDHGA6Q9Y5G7 932 aa20.69■□□□□ 0.9
VPS53-216ENST00000574029 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.69■□□□□ 0.94e-6■■■□□ 17.1
VPS53-216ENST00000574029 SPAG6O75602 509 aa20.68■□□□□ 0.9
VPS53-216ENST00000574029 RECKO95980 971 aa20.68■□□□□ 0.9
VPS53-216ENST00000574029 VCLP18206 1134 aa20.68■□□□□ 0.9
VPS53-216ENST00000574029 NELFEP18615 380 aaKnown RBP20.68■□□□□ 0.9
VPS53-216ENST00000574029 HMGCLP35914 325 aa20.68■□□□□ 0.9
VPS53-216ENST00000574029 ARHGAP25P42331 645 aa20.68■□□□□ 0.9
VPS53-216ENST00000574029 KLRB1Q12918 225 aa20.68■□□□□ 0.9
VPS53-216ENST00000574029 ERV3-1Q14264 604 aa20.68■□□□□ 0.9
VPS53-216ENST00000574029 FAM92BQ6ZTR7 304 aa20.68■□□□□ 0.9
VPS53-216ENST00000574029 B4GALNT4Q76KP1 1039 aa20.68■□□□□ 0.9
VPS53-216ENST00000574029 DTX3LQ8TDB6 740 aa20.68■□□□□ 0.9
VPS53-216ENST00000574029 BPIFA1Q9NP55 256 aa20.68■□□□□ 0.9
VPS53-216ENST00000574029 SEMA5BQ9P283 1151 aa20.68■□□□□ 0.9
VPS53-216ENST00000574029 POLHQ9Y253 713 aa20.68■□□□□ 0.9
VPS53-216ENST00000574029 A0A0A6YYK5 440 aaPredicted RBP20.67■□□□□ 0.9
VPS53-216ENST00000574029 SSU72P8A0A1W2PR75 194 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 GOLGA6L19H0YKK7 550 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 KCNJ13O60928 360 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 PMPCBO75439 489 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 CCNYL3P0C7X3 344 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 PTPN3P26045 913 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 GTF2H3Q13889 308 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 LRRC38Q5VT99 294 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 TCTN3Q6NUS6 607 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 IRGCQ6NXR0 463 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 CYB5D1Q6P9G0 228 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 PPP1R3BQ86XI6 285 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 RFX6Q8HWS3 928 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 TRAPPC5Q8IUR0 188 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 BRSK1Q8TDC3 778 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 TEKT5Q96M29 485 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 TRIM10Q9UDY6 481 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 LNPEPQ9UIQ6 1025 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 PADI1Q9ULC6 663 aa20.67■□□□□ 0.9
VPS53-216ENST00000574029 LOC285095A0A1B0GVY8 99 aa20.66■□□□□ 0.9
VPS53-216ENST00000574029 MKRN2OSH3BPM6 223 aa20.66■□□□□ 0.9
VPS53-216ENST00000574029 K7EM74 188 aa20.66■□□□□ 0.9
VPS53-216ENST00000574029 KATNA1O75449 491 aa20.66■□□□□ 0.9
VPS53-216ENST00000574029 MT-ND3P03897 115 aa20.66■□□□□ 0.9
VPS53-216ENST00000574029 KRT1P04264 644 aa20.66■□□□□ 0.9
VPS53-216ENST00000574029 NR1D1P20393 614 aa20.66■□□□□ 0.9
VPS53-216ENST00000574029 HALP42357 657 aa20.66■□□□□ 0.9
VPS53-216ENST00000574029 DMPKQ09013 629 aa20.66■□□□□ 0.9
VPS53-216ENST00000574029 PRKD1Q15139 912 aaPredicted RBP20.66■□□□□ 0.9
VPS53-216ENST00000574029 TTC30BQ8N4P2 665 aa20.66■□□□□ 0.9
VPS53-216ENST00000574029 MIB2Q96AX9 1013 aa20.66■□□□□ 0.9
VPS53-216ENST00000574029 RNF25Q96BH1 459 aaPredicted RBP20.66■□□□□ 0.9
VPS53-216ENST00000574029 DNAJC7Q99615 494 aa20.66■□□□□ 0.9
VPS53-216ENST00000574029 TRABDQ9H4I3 376 aa20.66■□□□□ 0.9
VPS53-216ENST00000574029 IL26Q9NPH9 171 aa20.66■□□□□ 0.9
VPS53-216ENST00000574029 UBP1Q9NZI7 540 aa20.66■□□□□ 0.9
VPS53-216ENST00000574029 DOPEY2Q9Y3R5 2298 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 CREG1O75629 220 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 TIAF1O95411 115 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 FECHP22830 423 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 CD68P34810 354 aaPredicted RBP20.65■□□□□ 0.9
VPS53-216ENST00000574029 PPP1CAP62136 330 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 DYNLT1P63172 113 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 DNASE1L3Q13609 305 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 ZDHHC20Q5W0Z9 365 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 TMEM135Q86UB9 458 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 OR8K1Q8NGG5 319 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 GPR150Q8NGU9 434 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 GDAP1Q8TB36 358 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 UBXN4Q92575 508 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 SLC41A2Q96JW4 573 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 TTC25Q96NG3 672 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 FCRL4Q96PJ5 515 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 TSPY26PQ9H489 355 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 DEF6Q9H4E7 631 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 PDE7BQ9NP56 450 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 LHX9Q9NQ69 397 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 PLAAQ9Y263 795 aa20.65■□□□□ 0.9
VPS53-216ENST00000574029 IGHV5-51A0A0C4DH38 117 aa20.64■□□□□ 0.89
VPS53-216ENST00000574029 CDC14CA4D256 554 aa20.64■□□□□ 0.89
VPS53-216ENST00000574029 C21orf140B9A014 251 aa20.64■□□□□ 0.89
VPS53-216ENST00000574029 RFPL1O75677 317 aa20.64■□□□□ 0.89
VPS53-216ENST00000574029 EPOP01588 193 aa20.64■□□□□ 0.89
VPS53-216ENST00000574029 CD97P48960 835 aa20.64■□□□□ 0.89
VPS53-216ENST00000574029 NR2C2P49116 596 aa20.64■□□□□ 0.89
VPS53-216ENST00000574029 PMS2P54278 862 aa20.64■□□□□ 0.89
VPS53-216ENST00000574029 NOMO1Q15155 1222 aa20.64■□□□□ 0.89
VPS53-216ENST00000574029 KDELC1Q6UW63 502 aa20.64■□□□□ 0.89
VPS53-216ENST00000574029 AMZ2Q86W34 360 aa20.64■□□□□ 0.89
VPS53-216ENST00000574029 RHOT2Q8IXI1 618 aa20.64■□□□□ 0.89
VPS53-216ENST00000574029 RASGEF1AQ8N9B8 481 aa20.64■□□□□ 0.89
VPS53-216ENST00000574029 CT55Q8WUE5 264 aa20.64■□□□□ 0.89
VPS53-216ENST00000574029 TWSG1Q9GZX9 223 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms