RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	DAPK3	O43293	454 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	PRICKLE3	O43900	615 aa	Predicted RBP	11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	LCA5L	O95447	670 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	FGFR1OP	O95684	399 aa	Known RBP	11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	JCHAIN	P01591	159 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	ALPP	P05187	535 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	EDN3	P14138	238 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	BPI	P17213	487 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	ARL4D	P49703	201 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	ZNF143	P52747	638 aa	Predicted RBP	11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	DRG2	P55039	364 aa	Known RBP	11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	GSDMD	P57764	484 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	RPL7A	P62424	266 aa	Known RBP	11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	TUBB4B	P68371	445 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	FMO1	Q01740	532 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	TUBB2A	Q13885	445 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	HIF1A	Q16665	826 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	TDRD12	Q587J7	1177 aa	Known RBP	11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	FAM198B	Q6UWH4	519 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	PARP9	Q8IXQ6	854 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	ZNF501	Q96CX3	271 aa	Predicted RBP	11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	CLIP3	Q96DZ5	547 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	PCMTD1	Q96MG8	357 aa	Predicted RBP	11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	TRAPPC9	Q96Q05	1148 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	MGME1	Q9BQP7	344 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	TUBB2B	Q9BVA1	445 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	NAA15	Q9BXJ9	866 aa	Known RBP	11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	VPS16	Q9H269	839 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	DHX35	Q9H5Z1	703 aa	Known RBP	11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	LATS2	Q9NRM7	1088 aa		11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	HOOK1	Q9UJC3	728 aa	Known RBP	11.51	□□□□□ -0.57
CLK3-222	ENST00000568232	NOVA2	Q9UNW9	492 aa	Known RBP	11.51	□□□□□ -0.57
CLK3-222	ENST00000568232		A0A0J9YYE9	177 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	C3orf80	F5H4A9	247 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	FZD6	O60353	706 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	TRBC1	P01850	177 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	ZNF30	P17039	623 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	IL4R	P24394	825 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	HTR7	P34969	479 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	RORA	P35398	523 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	MTIF2	P46199	727 aa	Known RBP	11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	AIF1	P55008	147 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	HSD11B2	P80365	405 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	ABR	Q12979	859 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	IHH	Q14623	411 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	INSC	Q1MX18	579 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	ZNF630	Q2M218	657 aa	Predicted RBP	11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	PTCHD3	Q3KNS1	767 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	DCAF10	Q5QP82	559 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	HENMT1	Q5T8I9	393 aa	Known RBP	11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	KLHDC7A	Q5VTJ3	777 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	DUS1L	Q6P1R4	473 aa	Known RBP	11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	FBXO38	Q6PIJ6	1188 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	RFX8	Q6ZV50	586 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	MRGPRE	Q86SM8	312 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	CDH24	Q86UP0	819 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	D2HGDH	Q8N465	521 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	FAR1	Q8WVX9	515 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	CXorf40B	Q96DE9	158 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	TIGD1	Q96MW7	591 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	LRFN5	Q96NI6	719 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	ZNF599	Q96NL3	588 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	MCEE	Q96PE7	176 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	KCTD15	Q96SI1	283 aa	Predicted RBP	11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	PCDHB18P	Q96TA0	734 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	POT1	Q9NUX5	634 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	ADAM22	Q9P0K1	906 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	AP4E1	Q9UPM8	1137 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	WDR37	Q9Y2I8	494 aa		11.5	□□□□□ -0.57
CLK3-222	ENST00000568232	UBA6	A0AVT1	1052 aa	Predicted RBP	11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	SIGLEC16	A6NMB1	481 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232		F8VZ95	297 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	MTA2	O94776	668 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	GFPT2	O94808	682 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	NADK	O95544	446 aa	Predicted RBP	11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	UNG	P13051	313 aa	Predicted RBP	11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	ZNF7	P17097	686 aa	Predicted RBP	11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	HSPA9	P38646	679 aa	Known RBP	11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	CDR2	Q01850	454 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	OGDH	Q02218	1023 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	VWA2	Q5GFL6	755 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	DNTTIP2	Q5QJE6	756 aa	Known RBP	11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	ABRAXAS1	Q6UWZ7	409 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	TRIM72	Q6ZMU5	477 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	BNC2	Q6ZN30	1099 aa	Predicted RBP	11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	MRGPRG	Q86SM5	289 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	ADGRG6	Q86SQ4	1221 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	RAB43	Q86YS6	212 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	HSCB	Q8IWL3	235 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	SYTL1	Q8IYJ3	562 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	CLEC1A	Q8NC01	280 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	C3orf20	Q8ND61	904 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	GPR150	Q8NGU9	434 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	CPT1B	Q92523	772 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	TM9SF4	Q92544	642 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	RELT	Q969Z4	430 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	PPM1M	Q96MI6	270 aa		11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	WDR77	Q9BQA1	342 aa	Predicted RBP	11.49	□□□□□ -0.57
CLK3-222	ENST00000568232	FAM83D	Q9H4H8	585 aa		11.49	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms