RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-223	ENST00000553686	ZDHHC11B	P0C7U3	371 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	GIMD1	P0DJR0	217 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	PPP3CB	P16298	524 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	LMO2	P25791	158 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	SLC8A1	P32418	973 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	ABCD1	P33897	745 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	LEPR	P48357	1165 aa	Known RBP	5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	ACOT2	P49753	483 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	ST8SIA6	P61647	398 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	RBP5	P82980	135 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	COG7	P83436	770 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	TFAM	Q00059	246 aa	Known RBP	5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	TUBB3	Q13509	450 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	PIN1	Q13526	163 aa	Predicted RBP	5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	ZNF267	Q14586	743 aa	Predicted RBP	5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	PTPRR	Q15256	657 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	CST6	Q15828	149 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	CCDC142	Q17RM4	750 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	SOWAHA	Q2M3V2	549 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	EIF2S3L	Q2VIR3	472 aa	Known RBP	5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	ADCK5	Q3MIX3	580 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	ZNF362	Q5T0B9	420 aa	Predicted RBP	5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	RINT1	Q6NUQ1	792 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	GUSBP11	Q6P575	273 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	SPNS3	Q6ZMD2	512 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	C1orf186	Q6ZWK4	172 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	TADA2B	Q86TJ2	420 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	PRIMA1	Q86XR5	153 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	MCEMP1	Q8IX19	187 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	MMP21	Q8N119	569 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	ZNF366	Q8N895	744 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	B3GALNT2	Q8NCR0	500 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	PSD4	Q8NDX1	1056 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	DDI1	Q8WTU0	396 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	TFAP2B	Q92481	460 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	SLC35A4	Q96G79	324 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	P2RY11	Q96G91	374 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	HAPLN3	Q96S86	360 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	IL12RB2	Q99665	862 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	CGRRF1	Q99675	332 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	CDH19	Q9H159	772 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	FBXO44	Q9H4M3	255 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	PRDM13	Q9H4Q3	707 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	SYNDIG1	Q9H7V2	258 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	DDX19A	Q9NUU7	478 aa	Known RBP	5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	ITGA11	Q9UKX5	1188 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686		U3KQA8	63 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	ADGRG4	Q8IZF6	3080 aa		5.99	□□□□□ -1.45
ATXN3-223	ENST00000553686	ARHGAP10	A1A4S6	786 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	C10orf142	B7Z368	130 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	STMND1	H3BQB6	276 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	NTN3	O00634	580 aa	Predicted RBP	5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	TPP1	O14773	563 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	MID1	O15344	667 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	TRIAP1	O43715	76 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	TBX18	O95935	607 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	CHRM2	P08172	466 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	KRT19	P08727	400 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	RARG	P13631	454 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	PRF1	P14222	555 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	CHRM3	P20309	590 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	KRT2	P35908	639 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	GNL1	P36915	607 aa	Predicted RBP	5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	COPB1	P53618	953 aa	Known RBP	5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	CACNA2D1	P54289	1103 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	ELL	P55199	621 aa	Predicted RBP	5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	EVC	P57679	992 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	MC1R	Q01726	317 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	MAPK7	Q13164	816 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	POSTN	Q15063	836 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	SETMAR	Q53H47	684 aa	Predicted RBP	5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	MDH1B	Q5I0G3	518 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	EARS2	Q5JPH6	523 aa	Known RBP	5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	TMEM215	Q68D42	235 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	ADAL	Q6DHV7	355 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	BLOC1S2	Q6QNY1	142 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	CRTC1	Q6UUV9	634 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	ASB18	Q6ZVZ8	466 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	RD3	Q7Z3Z2	195 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	SCAMP5	Q8TAC9	235 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	C5orf34	Q96MH7	638 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	AIFM3	Q96NN9	605 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	GFM1	Q96RP9	751 aa	Known RBP	5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	CMKLR1	Q99788	373 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	HEPH	Q9BQS7	1158 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	EFHD1	Q9BUP0	239 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	SLC29A3	Q9BZD2	475 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	AMBRA1	Q9C0C7	1298 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	TINAGL1	Q9GZM7	467 aa	Predicted RBP	5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	SNX25	Q9H3E2	840 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	PREB	Q9HCU5	417 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	IL37	Q9NZH6	218 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	AKAP7	Q9P0M2	348 aa	Predicted RBP	5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	PTGFRN	Q9P2B2	879 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	SERGEF	Q9UGK8	458 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	LOXL2	Q9Y4K0	774 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	COX11	Q9Y6N1	276 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	BSN	Q9UPA5	3926 aa		5.98	□□□□□ -1.45
ATXN3-223	ENST00000553686	ATP8B3	O60423	1300 aa		5.98	□□□□□ -1.45

Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms