RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 CDH6P55285 790 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 RING1Q06587 406 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 GALNT2Q10471 571 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 NFATC3Q12968 1075 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 RAB39AQ14964 217 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 PCLAFQ15004 111 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 SF3B4Q15427 424 aaKnown RBP eCLIP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 LSM12Q3MHD2 195 aaKnown RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 PPP6R3Q5H9R7 873 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 MAMSTRQ6ZN01 415 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 TIFABQ6ZNK6 161 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 CYP4V2Q6ZWL3 525 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 VASH1Q7L8A9 365 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 STRADAQ7RTN6 431 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 FAM131BQ86XD5 332 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 PEX5LQ8IYB4 626 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 CADM3Q8N126 398 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 SYNPOQ8N3V7 929 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 CPXM2Q8N436 756 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 MINDY2Q8NBR6 621 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 PDPRQ8NCN5 879 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 LRTOMTQ8WZ04 291 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 NT5C3BQ969T7 300 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 ATP6V1E2Q96A05 226 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 ACDQ96AP0 544 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 FAF2Q96CS3 445 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 RCN3Q96D15 328 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 ZNF641Q96N77 438 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 SLC29A1Q99808 456 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 CALN1Q9BXU9 219 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 COG4Q9H9E3 785 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 SIAEQ9HAT2 523 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 TMPRSS4Q9NRS4 437 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 PIGVQ9NUD9 493 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 DDIT4Q9NX09 232 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 FBXO10Q9UK96 956 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 EMCNQ9ULC0 261 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 ARIH1Q9Y4X5 557 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 OTOGLQ3ZCN5 2332 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 FANCMQ8IYD8 2048 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 HMX2A2RU54 273 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 ANKRD34BA5PLL1 514 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 ACSL4O60488 711 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 PLIN3O60664 434 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 ENDOD1O94919 500 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 BCL10O95999 233 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 S100BP04271 92 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 RALBP11234 206 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 HNRNPLP14866 589 aaKnown RBP eCLIP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 ZNF182P17025 639 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 POLR2EP19388 210 aaKnown RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 CCNA2P20248 432 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 GLDCP23378 1020 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 CNTFP26441 200 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 RPL10P27635 214 aaKnown RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 HOXD9P28356 352 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 RPS24P62847 133 aaKnown RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 MMRN1Q13201 1228 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 ART3Q13508 389 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 CA9Q16790 459 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 GEN1Q17RS7 908 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 SLC9B1Q4ZJI4 515 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 MTX3Q5HYI7 312 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 NHSL2Q5HYW2 709 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 FAXCQ5TGI0 409 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 PIK3R6Q5UE93 754 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 ZBTB46Q86UZ6 589 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 RFX6Q8HWS3 928 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 C10orf107Q8IVU9 208 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 CFAP52Q8N1V2 620 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 TMCO5AQ8N6Q1 288 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 CCDC185Q8N715 623 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 IL17RCQ8NAC3 791 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 WFDC5Q8TCV5 224 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 ACMSDQ8TDX5 336 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 USP33Q8TEY7 942 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 TFAP2CQ92754 450 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 TMA16Q96EY4 203 aaKnown RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 CNDP1Q96KN2 507 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 ALPK1Q96QP1 1244 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 ACOX2Q99424 681 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 CIB1Q99828 191 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 SNRNP25Q9BV90 132 aaKnown RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 DHX35Q9H5Z1 703 aaKnown RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 POLR1BQ9H9Y6 1135 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 TCF7L2Q9NQB0 619 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 PRMT8Q9NR22 394 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.6□□□□□ -1.19
LIMA1-216ENST00000552909 IFT52Q9Y366 437 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 SNX13Q9Y5W8 968 aa7.6□□□□□ -1.19
LIMA1-216ENST00000552909 TRIM64A6NGJ6 449 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 FAM159BA6NKW6 160 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 ZNF839A8K0R7 811 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 KCNU1A8MYU2 1149 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 WASH3PC4AMC7 463 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 TRIM38O00635 465 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 SLC22A2O15244 555 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 GMNNO75496 209 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 GCATO75600 419 aa7.59□□□□□ -1.19
LIMA1-216ENST00000552909 CLPXO76031 633 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms