RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 PKD2L2Q9NZM6 624 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 OGFRQ9NZT2 677 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 ATXN10Q9UBB4 475 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 KCTD3Q9Y597 815 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 HEY1Q9Y5J3 304 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 KCNMB2Q9Y691 235 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 RPS6KL1Q9Y6S9 549 aa11.68□□□□□ -0.54
CKAP4-202ENST00000552828 MIF4GDA9UHW6 222 aaKnown RBP11.67□□□□□ -0.54
CKAP4-202ENST00000552828 CST8O60676 142 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 RECKO95980 971 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 GP1BBP13224 206 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 MAPK9P45984 424 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 CD97P48960 835 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 NR2C2P49116 596 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 PPM1FP49593 454 aaPredicted RBP11.67□□□□□ -0.54
CKAP4-202ENST00000552828 GFERP55789 205 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 DYNLT1P63172 113 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 SLC10A2Q12908 348 aaPredicted RBP11.67□□□□□ -0.54
CKAP4-202ENST00000552828 SEPT6Q14141 434 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 IL11RAQ14626 422 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 PDK1Q15118 436 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 PPP2R5EQ16537 467 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 TMEM26Q6ZUK4 368 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.67□□□□□ -0.54
CKAP4-202ENST00000552828 CCNYQ8ND76 341 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 MLPHQ9BV36 600 aaPredicted RBP11.67□□□□□ -0.54
CKAP4-202ENST00000552828 ADGRE3Q9BY15 652 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 OR2AG1Q9H205 316 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 TRIM39Q9HCM9 518 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 LZTFL1Q9NQ48 299 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 SCHIP1Q9P0W5 487 aaPredicted RBP11.67□□□□□ -0.54
CKAP4-202ENST00000552828 NFKBIL1Q9UBC1 381 aaPredicted RBP11.67□□□□□ -0.54
CKAP4-202ENST00000552828 KLHL3Q9UH77 587 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 PPP2R2CQ9Y2T4 447 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 CAPN6Q9Y6Q1 641 aa11.67□□□□□ -0.54
CKAP4-202ENST00000552828 hCG_1818297A0A087WSY0 165 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 UBXN7O94888 489 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 FTCDO95954 541 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 ZNF28P17035 718 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 SLC19A1P41440 591 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 DCDC1P59894 354 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 IFI35P80217 286 aaPredicted RBP11.66□□□□□ -0.54
CKAP4-202ENST00000552828 KLRB1Q12918 225 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 LLGL1Q15334 1064 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 ATP1A1-AS1Q5TC04 95 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 PDPK2PQ6A1A2 396 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 TCTN3Q6NUS6 607 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 C6orf15Q6UXA7 325 aaPredicted RBP11.66□□□□□ -0.54
CKAP4-202ENST00000552828 PRSS42Q7Z5A4 293 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 ADGRG6Q86SQ4 1221 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 CCDC13Q8IYE1 715 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 CNTD1Q8N815 330 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 MIB2Q96AX9 1013 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 HDAC11Q96DB2 347 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 PSMG3-AS1Q96PY0 264 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 ALS2CR12Q96Q35 445 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 TRIB3Q96RU7 358 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 ZSCAN5AQ9BUG6 496 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 ULBP3Q9BZM4 244 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 BRD8Q9H0E9 1235 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 ZNF768Q9H5H4 540 aaKnown RBP11.66□□□□□ -0.54
CKAP4-202ENST00000552828 ZFYVE1Q9HBF4 777 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 KLC4Q9NSK0 619 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 ZNF624Q9P2J8 865 aaPredicted RBP11.66□□□□□ -0.54
CKAP4-202ENST00000552828 SLC23A2Q9UGH3 650 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 MAN2B2Q9Y2E5 1009 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 EFR3BQ9Y2G0 817 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 TTLL3Q9Y4R7 772 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 PCDHGA6Q9Y5G7 932 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 MRPS18BQ9Y676 258 aaKnown RBP11.66□□□□□ -0.54
CKAP4-202ENST00000552828 SLC30A1Q9Y6M5 507 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 ZFC3H1O60293 1989 aaKnown RBP11.66□□□□□ -0.54
CKAP4-202ENST00000552828 SPTAN1Q13813 2472 aaKnown RBP11.66□□□□□ -0.54
CKAP4-202ENST00000552828 UNC79Q9P2D8 2635 aa11.66□□□□□ -0.54
CKAP4-202ENST00000552828 PPP1R12AO14974 1030 aaPredicted RBP11.65□□□□□ -0.54
CKAP4-202ENST00000552828 SLC25A14O95258 325 aaPredicted RBP11.65□□□□□ -0.54
CKAP4-202ENST00000552828 JCHAINP01591 159 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 FGF5P12034 268 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 DLSTP36957 453 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 CD86P42081 329 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 FOXM1Q08050 763 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 PPIDQ08752 370 aaKnown RBP11.65□□□□□ -0.54
CKAP4-202ENST00000552828 AP1B1Q10567 949 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.65□□□□□ -0.54
CKAP4-202ENST00000552828 ZNF569Q5MCW4 686 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 CCDC181Q5TID7 509 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 AGAP9Q5VTM2 703 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 C16orf46Q6P387 395 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 ABRAXAS1Q6UWZ7 409 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 NPNTQ6UXI9 565 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 WASH2PQ6VEQ5 465 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 TMC3Q7Z5M5 1100 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 RBM12BQ8IXT5 1001 aaKnown RBP11.65□□□□□ -0.54
CKAP4-202ENST00000552828 FAM26EQ8N5C1 309 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 TRAM1L1Q8N609 369 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 GPR26Q8NDV2 337 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 LRRN4Q8WUT4 740 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 KLHL6Q8WZ60 621 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 ALG3Q92685 438 aa11.65□□□□□ -0.54
CKAP4-202ENST00000552828 P3H4Q92791 437 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms