RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 CYP4F2P78329 520 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 CYP4F3Q08477 520 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 TRIP4Q15650 581 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 SLC2A7Q6PXP3 512 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 RSPH1Q8WYR4 309 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 STARD8Q92502 1023 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 TMEM159Q96B96 161 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 TMEM169Q96HH4 297 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 CDKN2AIPNLQ96HQ2 116 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 TRIM8Q9BZR9 551 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 DYRK4Q9NR20 520 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 PDP1Q9P0J1 537 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 CAB39Q9Y376 341 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 ARIH1Q9Y4X5 557 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 SNX8Q9Y5X2 465 aa8.33□□□□□ -1.08
LIMCH1-216ENST00000512820 TBX18O95935 607 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 HOXB6P17509 224 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 SERPINA4P29622 427 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 ALDH4A1P30038 563 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 HPCAL1P37235 193 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 GPR15P49685 360 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 DIO3P55073 304 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 ST8SIA6P61647 398 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 CDKL1Q00532 357 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 ECT2LQ008S8 904 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 TRIM32Q13049 653 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 PLD1Q13393 1074 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 STARD3Q14849 445 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 ZNF829Q3KNS6 432 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 TIMM50Q3ZCQ8 353 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 DET1Q7L5Y6 550 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 KBTBD8Q8NFY9 601 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 OR6K2Q8NGY2 324 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 NSMCE3Q96MG7 304 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 CGREF1Q99674 301 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 C2orf49Q9BVC5 232 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 MIEF1Q9NQG6 463 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 GIMAP4Q9NUV9 329 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 H2AFY2Q9P0M6 372 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 ENOPH1Q9UHY7 261 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 PCDHB1Q9Y5F3 818 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 PCDHGA7Q9Y5G6 932 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 CDC7O00311 574 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 INSIG1O15503 277 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 HOXA2O43364 376 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 CLDN11O75508 207 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 STT3AP46977 705 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 MAPKAPK2P49137 400 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 MYBPC1Q00872 1141 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 ARHGEF6Q15052 776 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 FAM110CQ1W6H9 321 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 FGD3Q5JSP0 725 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 CYP20A1Q6UW02 462 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 GPRIN1Q7Z2K8 1008 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 P2RY8Q86VZ1 359 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 CYP4Z1Q86W10 505 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 LIX1Q8N485 282 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 HTRA1Q92743 480 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 APOLD1Q96LR9 279 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 EHD3Q9NZN3 535 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 SLC25A13Q9UJS0 675 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 BTBD3Q9Y2F9 522 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 COL4A1P02462 1669 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 AHDC1Q5TGY3 1603 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 EFCAB10A6NFE3 127 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 TCAF2A6NFQ2 919 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 FAM220BPB1ANY3 271 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 H3BN98 237 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 SOCS2O14508 198 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 TBL1XO60907 577 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 NIPSNAP2O75323 286 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 HOXA11P31270 313 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 MAGEA3P43357 314 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 LEPRP48357 1165 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 DGKQP52824 942 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 SCAPQ12770 1279 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 DUSP4Q13115 394 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 GRB7Q14451 532 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 INAQ16352 499 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 C11orf96Q7Z7L8 435 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 SLC15A3Q8IY34 581 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 TTC30BQ8N4P2 665 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 GANCQ8TET4 914 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 TAMM41Q96BW9 452 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 MTERF3Q96E29 417 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 ZBED3Q96IU2 234 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 OLFM1Q99784 485 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 AARSD1Q9BTE6 412 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 SOX17Q9H6I2 414 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 ZIM2Q9NZV7 527 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 PSME2Q9UL46 239 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 TLR6Q9Y2C9 796 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 ENPP3O14638 875 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 STK16O75716 305 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 BMP10O95393 424 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 MAGP20916 626 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 EPHB3P54753 998 aa8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 PPP1R8Q12972 351 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-216ENST00000512820 PTPRCAPQ14761 206 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms