RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 TIAF1O95411 115 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 NDST3O95803 873 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 KRT1P04264 644 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 FGF5P12034 268 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 ZFXP17010 805 aaPredicted RBP12.17□□□□□ -0.46
CPSF3-204ENST00000489403 IDSP22304 550 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 PTPN3P26045 913 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 PPP1CAP62136 330 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 DYNLT1P63172 113 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 TMEM115Q12893 351 aaPredicted RBP12.17□□□□□ -0.46
CPSF3-204ENST00000489403 UBAP2LQ14157 1087 aaKnown RBP12.17□□□□□ -0.46
CPSF3-204ENST00000489403 ERV3-1Q14264 604 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 NOMO1Q15155 1222 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 TEX44Q53QW1 395 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 CACHD1Q5VU97 1274 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 TMEM135Q86UB9 458 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 PPP1R3BQ86XI6 285 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 RFX6Q8HWS3 928 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 TRAPPC5Q8IUR0 188 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 RBM12BQ8IXT5 1001 aaKnown RBP12.17□□□□□ -0.46
CPSF3-204ENST00000489403 GPR150Q8NGU9 434 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 SLC35G2Q8TBE7 412 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 RNF25Q96BH1 459 aaPredicted RBP12.17□□□□□ -0.46
CPSF3-204ENST00000489403 MAK16Q9BXY0 300 aaKnown RBP12.17□□□□□ -0.46
CPSF3-204ENST00000489403 RAB33BQ9H082 229 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 DEF6Q9H4E7 631 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 EPHA6Q9UF33 1036 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.17□□□□□ -0.46
CPSF3-204ENST00000489403 DOPEY2Q9Y3R5 2298 aa12.17□□□□□ -0.46
CPSF3-204ENST00000489403 SSU72P8A0A1W2PR75 194 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 CLEC18AA5D8T8 446 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 K7EM74 188 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 GPR39O43194 453 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 KATNA1O75449 491 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 NELFEP18615 380 aaKnown RBP12.16□□□□□ -0.46
CPSF3-204ENST00000489403 CD68P34810 354 aaPredicted RBP12.16□□□□□ -0.46
CPSF3-204ENST00000489403 HMGCLP35914 325 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 KLRB1Q12918 225 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 GTF2H3Q13889 308 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.16□□□□□ -0.46
CPSF3-204ENST00000489403 IRGCQ6NXR0 463 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 CLEC18BQ6UXF7 455 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 TTC30BQ8N4P2 665 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 CLEC18CQ8NCF0 446 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 GDAP1Q8TB36 358 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 ZDHHC12Q96GR4 267 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 TEKT5Q96M29 485 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 SRPK1Q96SB4 655 aaKnown RBP12.16□□□□□ -0.46
CPSF3-204ENST00000489403 LHX9Q9NQ69 397 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 SEMA5BQ9P283 1151 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 LNPEPQ9UIQ6 1025 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 KCND3Q9UK17 655 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 POLHQ9Y253 713 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 PLAAQ9Y263 795 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 PCDHGA6Q9Y5G7 932 aa12.16□□□□□ -0.46
CPSF3-204ENST00000489403 IGHV5-51A0A0C4DH38 117 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 LOC285095A0A1B0GVY8 99 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 CDC14CA4D256 554 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 MKRN2OSH3BPM6 223 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 FOLR1P15328 257 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 VCLP18206 1134 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 FECHP22830 423 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 CA5AP35218 305 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 SPAM1P38567 509 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 ARHGAP25P42331 645 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 HALP42357 657 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 CTSCP53634 463 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 DMPKQ09013 629 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 DNASE1L3Q13609 305 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 PRKD1Q15139 912 aaPredicted RBP12.15□□□□□ -0.46
CPSF3-204ENST00000489403 LRRC38Q5VT99 294 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 CCDC70Q6NSX1 233 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 TCTN3Q6NUS6 607 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 CYB5D1Q6P9G0 228 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 KDELC1Q6UW63 502 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 MFSD7Q6UXD7 560 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 FAM83HQ6ZRV2 1179 aaPredicted RBP12.15□□□□□ -0.46
CPSF3-204ENST00000489403 RHOT2Q8IXI1 618 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 BRSK1Q8TDC3 778 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 CT55Q8WUE5 264 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 MIB2Q96AX9 1013 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 SLC41A2Q96JW4 573 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 DNAJC7Q99615 494 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 XPO4Q9C0E2 1151 aaKnown RBP12.15□□□□□ -0.46
CPSF3-204ENST00000489403 IL26Q9NPH9 171 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 SPTLC3Q9NUV7 552 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 SAE1Q9UBE0 346 aaPredicted RBP12.15□□□□□ -0.46
CPSF3-204ENST00000489403 FAM153AQ9UHL3 310 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 HYOU1Q9Y4L1 999 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 PTPN13Q12923 2485 aa12.15□□□□□ -0.46
CPSF3-204ENST00000489403 MTSS1O43312 755 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 AKR1B10O60218 316 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 UGT1A9O60656 530 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 KCNJ13O60928 360 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 CREG1O75629 220 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 RFPL1O75677 317 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 MT-ND3P03897 115 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 CCNYL3P0C7X3 344 aa12.14□□□□□ -0.47
CPSF3-204ENST00000489403 PECAM1P16284 738 aaPredicted RBP12.14□□□□□ -0.47
CPSF3-204ENST00000489403 UGT1A6P19224 532 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms